| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1239 |
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| Symbol | |
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| ID | 5372613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 1480422 |
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| End bp | 1481000 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640829438 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001365453 |
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| Protein GI | 152999772 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00674389 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGGAC AATTAAGTGA TCAACAATTA GTTGAGCGCG TACAACAAGG TGATAAAAAC
GCTTTTAACC TGTTAGTGCT TAAATATCAA AGTAAAGTCA TTAGCTTGAT ATCCCGTTAT
GTACGGAACC AAGCGGACGT TGCCGATGTC GCACAGGAAG CGTTTATCAA AGCTTATCGA
GCTTTGCCAA ACTTTCGCGG TGAAAGTGCA TTTTATACTT GGTTGTACCG CATCGCAGTA
AACACTGCGA AGAATTATCT CGTATCACAG GGGCGCAGAA CGCCCGCTAA TGATGTTGAT
GCAGAAGATG CCGAATATTA TGAAGGTAGT GACGCGCTGA AGGAGTTCGC CTCCCCAGAA
CGGCTATTGT TATCGGAAGA AATCAAAAAA GTGATTTTCG ATACCTTAGA AACGCTGCCA
GAAGAATTAC GAATGGCCAT CTCGTTGCGT GAACTTGATG GAATGAGTTA CGAAGATATT
GCCATAGTCA TGGATTGCCC CGTAGGGACC GTAAGATCGC GTATCTTCCG AGCTCGAGAG
GCAATCGATA AAAAGCTCCA GCCGTTGCTG GAAGCCTAA
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| Protein sequence | MSGQLSDQQL VERVQQGDKN AFNLLVLKYQ SKVISLISRY VRNQADVADV AQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NTAKNYLVSQ GRRTPANDVD AEDAEYYEGS DALKEFASPE
RLLLSEEIKK VIFDTLETLP EELRMAISLR ELDGMSYEDI AIVMDCPVGT VRSRIFRARE
AIDKKLQPLL EA
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