| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1174 |
|---|
| Symbol | |
|---|
| ID | 5373752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 1401630 |
|---|
| End bp | 1403195 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640829373 |
|---|
| Product | amino acid/peptide transporter |
|---|
| Protein accession | YP_001365389 |
|---|
| Protein GI | 152999708 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.211879 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATTG GGACTGCTCC GGTAAGTAAA ACACATTCAT TTATGACTGT GTCTCTTATC
GAATTATGGG AACGCTTTGG TTATTACGGC ATGCAAGCGC TGATTGTGTA CTTTATGGTG
CAGCGCCTTG GCTTTGATGA CTCACGTGCA AACTTAGTAT GGAGTGCCTG TGCGGCGCTC
ATTTATGTAT CACCGGCCAT TGGTGGTTGG GTTGGGGATA AGATCCTCGG CACTAAACGC
ACTATGCTGC TGGGTGCGGG GATTTTGTCT CTGGGTTATG CGCTGATGGC CGTACCCACT
GAAAATACGT GGTTTATGTT TTCAGCGCTC GGTGTGATTG TGGTCGGTAA CGGCCTGTTC
AAACCCAATG CCGGTAACTT AGTTCGTAAA ATTTACGAAG GTGACGATTC TAAAATAGAC
AGTGCGTTTA CCATCTATTA TATGGCGGTC AACGTTGGCT CGACCTTCTC TATGTTGCTC
ACGCCTTGGA TTAAAGATTA TGTCAACGCC CAGTATGGCA ACGAGTTTGG CTGGCATGCC
GCCTTTGCCG TGTGTTGTGT CGGCATATTG GTGGGGTTAG GCAACTATGC ACTTATGCGT
AAGAGTTTAG TCCATTACGG TTCTGAGCCA GATACTCGCC CAGTGAACAA GAAAAGCCTC
GCGATAGTAT TAGCTCTGGC CGCGTTGTCA GTAGTCGCTT CGGCCATTAT TCTGGAATAT
GAAGCGGTTG CCCGTGTCTT TGTTTACGCC GCAGGCGTAG CCGTATTAGC AATCTTCTTT
CACTTGATCC GCACCAGTGA AACCAGTGAA CGAGCGGGAC TGATTGCGGC GCTGATCCTC
ACAGTGCAAA CCGTGTTCTT CTTTATCTTC TATCAGCAAA TGTCGACTTC ATTGGCGCTG
TTTGCCCTGC GTAACGTGGA CTGGGATTTC CAAATCTTTG GTACCCATTT GTGGACTTGG
TCTCCGGCCC AGTTTCAAGC ATTGAATCCA TTATGGATTA TGGTGTTAAG TCCAATCTTG
GCTTGGAGTT ATTCGTGGGC GGGTCGCAAT GATAAAGACT TCTCTATCGC GGCGAAATTT
GCCCTCGGTT TTGCCGTCGT CGCTATCGGC TTCTTTATCT ATGGCTTTGC CGGACAATTC
GCCGTCAACG GTAAAACCTC TTCATGGATC ATGATCTGGG GCTATGCCTC TTACTCTTTA
GGCGAATTGC TGGTGAGTGG TCTTGGTCTT GCCATGATTG CCCGCTACGT ACCTGCGCGT
ATGGGCGGCT TTATGATGGG CGCCTATTTC GTCGCCTCAG GCATTTCACA GTATCTGGGC
GGTGTGGTCG CTAACTTCGC CAGTGTACCG AAAGATCTAG TCGATCCACT GCAAACCTTA
CCCGTATACA CCAGCCTATT TAATAAATTG GGTATCGCGG CTGTGGTTTG TACCTTTATC
GCCCTTGCGG TATTACCGCT AATGCGTCGC CTGACTGAGA CTCACCATTC ACATAATAAT
GCTGCTGATC ATGATATTAA TGAAAGTGCT GCGGCATCGC TAAGGGATGT AAAAGCCGAG
CAATAA
|
|---|
| Protein sequence | MTIGTAPVSK THSFMTVSLI ELWERFGYYG MQALIVYFMV QRLGFDDSRA NLVWSACAAL
IYVSPAIGGW VGDKILGTKR TMLLGAGILS LGYALMAVPT ENTWFMFSAL GVIVVGNGLF
KPNAGNLVRK IYEGDDSKID SAFTIYYMAV NVGSTFSMLL TPWIKDYVNA QYGNEFGWHA
AFAVCCVGIL VGLGNYALMR KSLVHYGSEP DTRPVNKKSL AIVLALAALS VVASAIILEY
EAVARVFVYA AGVAVLAIFF HLIRTSETSE RAGLIAALIL TVQTVFFFIF YQQMSTSLAL
FALRNVDWDF QIFGTHLWTW SPAQFQALNP LWIMVLSPIL AWSYSWAGRN DKDFSIAAKF
ALGFAVVAIG FFIYGFAGQF AVNGKTSSWI MIWGYASYSL GELLVSGLGL AMIARYVPAR
MGGFMMGAYF VASGISQYLG GVVANFASVP KDLVDPLQTL PVYTSLFNKL GIAAVVCTFI
ALAVLPLMRR LTETHHSHNN AADHDINESA AASLRDVKAE Q
|
|---|
| |