| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1129 |
|---|
| Symbol | |
|---|
| ID | 5373563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1344194 |
|---|
| End bp | 1344586 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640829328 |
|---|
| Product | type IV pilus biogenesis protein PilE |
|---|
| Protein accession | YP_001365344 |
|---|
| Protein GI | 152999663 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4968] Tfp pilus assembly protein PilE |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTC AATGTAAAGG TTTTACACTA ATTGAAGTTA TGATAACGGT TGTTATTATC
GGAATCTTAG CTGCTATTGC TTACCCGTCC TATACTCAAT ACATAGCATT GAGTGCTAGG
TCGGAAGGAT TGGCTGCATT AATGCGTATT GCAAATTTAC AAGAGCAGTA TTACTTAGAT
AATCGTGTGT ATGCAACTGA TTTAAGTAAG TTAGTTGGTG CTAATCCCTA TGTAACAGAG
CATCAGCACT ACTCTGTGTC ATCAAGCGGG ACGTCAAGCT TTACGATTAA GGCTGTTGCT
CAGGGCGTTC AGGCTAGCCG TGATGCTGCT TGCTCTCCTT TAACAATATC AGATACTGGG
GCAAAAGGTC CGAGTGCGGA GTGTTGGAAA TGA
|
|---|
| Protein sequence | MKVQCKGFTL IEVMITVVII GILAAIAYPS YTQYIALSAR SEGLAALMRI ANLQEQYYLD
NRVYATDLSK LVGANPYVTE HQHYSVSSSG TSSFTIKAVA QGVQASRDAA CSPLTISDTG
AKGPSAECWK
|
|---|
| |