| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1126 |
|---|
| Symbol | |
|---|
| ID | 5370689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1339228 |
|---|
| End bp | 1340196 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640829325 |
|---|
| Product | type IV pilus assembly protein PilW |
|---|
| Protein accession | YP_001365341 |
|---|
| Protein GI | 152999660 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4966] Tfp pilus assembly protein PilW |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATT CAAAAAACTG TCAGAAAGGG ATGTCATTAG TCGAGTTAAT GGTCTCTATG
GTCATTGGCC TATTTCTCAC TCTTGGGCTT TTTGCCATGT TTAGCATGTC CTCTTCTAAT
GTAATTACGA CGAGCCAATT TAATCAATTA CAAGAAAATG GCCGAATTGC TTTATCACTA
ATGGAAAGAG ATATCAGCCA ATTAGGTTTC ATGGGGGACA TAACGGGAAC CGATTTTGTA
CTTGGGACCA ATATGACCTT GAGGGATGGT ATTGCAAATG ATTGCATTGG TGCAGGCGTA
AATAACGGTA CTTTACCTAA TGCAGAACCT GCACATTTTA GACGTCTGTG GGGATACGAA
GAAGGTAAGA GTGGAGATAC GTTAAGTTGC TTATCTGGTG TAAATCAGAA TACTGACGTA
ATTCAAATCA AAAGGTTAGT AGGGCCACCG GTCACTAATC CAGATGGTGA ACGTTTTTAT
ATGGCAGCAA CCTCGAGTGA AGCAGTGATG TTTAAAGGTG GTAATCCGCC TAATCCTGTG
CTCGAAAATG CTCGTTTTTG GGAATATCAA CATCATGTCT ATTTTATTAA AAATGATGGT
TCCGTGCCTG TTTTACGCCG AAAAACGTTA ACTAAAAATA ATGGCATGAA CAACGAAGAG
CAGTTAGTTG AAGGCATTGA GAATATGCGT ATTCTCTATG GTTTTGATAG TAACGGAGAT
GATACGGCCG ATAGTTTTAT GCCAGCAGAA AATGTAACAA CATTAATGTG GGATAACGAA
TTATTTCAGC GGCTTGTTGC ATTGAGGGTT TTTTTATTGG TTCGTGCTAT CGATGAAGAT
AAAAGTTATA CCAATGAAAC AACTTACACT TTAGGCGATA AAGAAATTAA GAATTTGAAT
GATCATTATC GCCGCAAGAT TGTCTCGACG ACTATGGTAC TTGCTAACCC TGTACTAATT
AGAAACTAG
|
|---|
| Protein sequence | MANSKNCQKG MSLVELMVSM VIGLFLTLGL FAMFSMSSSN VITTSQFNQL QENGRIALSL
MERDISQLGF MGDITGTDFV LGTNMTLRDG IANDCIGAGV NNGTLPNAEP AHFRRLWGYE
EGKSGDTLSC LSGVNQNTDV IQIKRLVGPP VTNPDGERFY MAATSSEAVM FKGGNPPNPV
LENARFWEYQ HHVYFIKNDG SVPVLRRKTL TKNNGMNNEE QLVEGIENMR ILYGFDSNGD
DTADSFMPAE NVTTLMWDNE LFQRLVALRV FLLVRAIDED KSYTNETTYT LGDKEIKNLN
DHYRRKIVST TMVLANPVLI RN
|
|---|
| |