Gene Shew185_1061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1061 
Symbol 
ID5373078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1259609 
End bp1260754 
Gene Length1146 bp 
Protein Length381 aa 
Translation table11 
GC content47% 
IMG OID640829254 
Productsecretion protein HlyD family protein 
Protein accessionYP_001365276 
Protein GI152999595 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCTAT TGCTGATATT GACCTACGCC GCTATCTGTA TTGTTATTTT TAAAGTCTTT 
AAAATCCCTC TGACCAAATG GACGGTTCCT ACTGCCGTTT TGGGGGGCGT GGTGCTCATC
GGTGCCTTGA TACTGCTAAT GAACTATAAC CATCCCTATT CACGTTTTGC TCGGGAATAT
TTTGTCACCA TTCCGATTAC ACCCGCAGTA AAAGGGTTAG TTAGTCGTGT TGAAGTGCAG
CCAAATACTC CGGTTAAACA AGGGGATGTA CTTTTTCGGA TTGATCCCAT CCCCTTTGAG
GCCGTAGTAA AGCGTAAGCG TGCCGCGTTA GTCGCTGCCG AGTTAGAAGT GCCACAGCTC
GCCGCCGCAT TGGAATCGGC TAAAGCTAAT GTTGAGCGAG TCAATGCTGA TAAAGATCGC
AATAAATCCG CCTATGAACG CTATGAAAGC GGTCATCGAA AAGGAGGCGC TAACTCTCCC
TTTACCGCAT TAGAATTGGA TAATAAACGC CAACTGTATC TTGCCTCTGA AGCGCAGTTA
ACTGCCGCTA GATCAGAAGA GTTACGGATG AGGCTCGCCT ATGAGTCTAA TATTGATGGA
GTTAATACCA AAGTGGCTGG CTTACAGGGA GATTTAGCGA GCGCACTCTA TGATTTAGAG
CAGACCGTCG TGCGAGCACC CGCTGACGGT ATCGTCACAC AAATGGCACT CCGTCCGGGG
GCTATGGCTG TGCCTTTACC ATTACGTCCC GTGATGAGCT TTATCCCTGA CGAGCAACGT
TATTTTGCCG GAGCCTTTTG GCAGAATTCC CTACTGCGCC TGAAAGAAGG CGATGAGGCC
GAGATTATTC TCGATGCCGC GCCAGGGAAA GTGTTTAAAG GCAAAGTGGC GAAAGTGCTA
CCCGCAATGG CTGAAGGTGA GATCCAAATG GGTGGCGTAT TAGCGTCCTC CAGTCGTCTG
TTTCAAAATG GTCGAGTGGT TGTTCTTATC GATATAGATG ACGATGCTAT TCGTAAAGAG
TTCCCTGCTG GAGTGTCAGG TCAAGTTGCT ATTTACACTG AGCACTTTCA TCATGTAGCT
GTAATGCGTA AGGTATTACT CAGGATGCAA GGGTGGTTGA ATTACTTATT TTTTGATGGA
CATTAG
 
Protein sequence
MDLLLILTYA AICIVIFKVF KIPLTKWTVP TAVLGGVVLI GALILLMNYN HPYSRFAREY 
FVTIPITPAV KGLVSRVEVQ PNTPVKQGDV LFRIDPIPFE AVVKRKRAAL VAAELEVPQL
AAALESAKAN VERVNADKDR NKSAYERYES GHRKGGANSP FTALELDNKR QLYLASEAQL
TAARSEELRM RLAYESNIDG VNTKVAGLQG DLASALYDLE QTVVRAPADG IVTQMALRPG
AMAVPLPLRP VMSFIPDEQR YFAGAFWQNS LLRLKEGDEA EIILDAAPGK VFKGKVAKVL
PAMAEGEIQM GGVLASSSRL FQNGRVVVLI DIDDDAIRKE FPAGVSGQVA IYTEHFHHVA
VMRKVLLRMQ GWLNYLFFDG H