Gene Shew185_1058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1058 
Symbol 
ID5372122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1255679 
End bp1257403 
Gene Length1725 bp 
Protein Length574 aa 
Translation table11 
GC content49% 
IMG OID640829251 
Productpseudouridine synthase 
Protein accessionYP_001365273 
Protein GI152999592 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCTTC AGCCTTCTTG CTTTACCTCT TTCACACAAG CCATTGATGC CTATGCCCTG 
CCGCAACGTT TTACTTTTCC TTTCTATTAC GAACCGCATC CATTATGCGT GCTTGCAGCC
AACGAATTAC AACACCACCT CGAGACTCAG CACGACTGGC AACATAACTT TGGCCTAACG
GGTGAGTTAA CTGGCGCCAT TGGCAAGATG TTCGGCGTAT TGCTGGTACA AAATCCGCAA
GGTGAAGTCG GCTATTTATC GGCATTTTCG GGCAAATTAG CCGAGCAAAA CCATTGGCCA
CGCTTTGTTC CACCTGTGTT TGATATGCTG GCTAAGGACA ATTTTTTCCA CGCCGAAAAT
CTGCAAATCA ACCAAATTAA CGAGCAGCTG TTTGCAGTAG AAAACCATCC CGACATTTCG
AGGCTATTAA CCGAGCTAGA AACTGAACAA GCTCAAGCGC AAGCCGAACT TGCCGCCCAC
AGACAAGTGA TGATCGATGG CCGCCAATCT CGCAAGGCGC AGCGTAATCA ACTCGCAGCC
CAATTGGCTG CCAATCCGAC TGATGAGACC TTGCCTGAAA ACGCAATAAC TGAAGCAAAG
CTCAGTCAAG AAAGCATCAA TGAAAAGAAT CAGTTAAGAG ATATTAAACG CTATTGGGAT
GAACGTATTC ATGTCATCAG CCAAGCGCTA AGCCAACTGA CAGATGAGCG TGACGCGTTA
CGACAACAGC GCAAACGGCT CTCGGCGGCG CTGCAGCAAA AGCTGTTTGA GCAGTATCGG
TTTTTGAATA TTAAAGGCAC AGAAAAGAGC CTTAACGGCA TATTTAACGG TACGGTTGAG
TTAACGCCAC CCGCAGGCTC GGGCGAATGT GCCGCGCCTA AGTTGTTACA TTACGCCTTT
AAACATGGTC TTAAGCCATT AGCTATTGCC GAGTTTTGGT GGGGCGCGCC GCCAAAATCT
GAAATCCGCC AACATAAGCA GTTTTATCCC GCCTGCCTGC GAAAATGCCA ACCTATCTTG
GGGCATATGC TCGAAGGGCT CGCAGTCGAT GACAACCCTT TACTTACCAA CCCCGCCGAA
GGTAAAACTT TAGCCATCCT CTATCAAGAC GATTCGATGG CGATTGTAAA TAAACCCGCC
GAGTTTTTAT CCGTGCCCGG CAAAGAAATT GAAGACTCAG TGTATTCGCG CATGCGCCAA
ACCTTCCCCC ATGCCACAGG GCCGCTTATC GTCCACAGGC TCGATATGTC GACCTCGGGA
TTAATGGTGA TCGCGCTGAC AAAAGAGGCC CATAAACAGC TGCAAAAACA ATTTATCCAG
CGCACTGTGA CTAAACGTTA TGTGGCACTT TTGGCGGGAA TGCCTGCGGT AATGGCGAAT
AAGCAAGCGA CGGGTAACAT CTCTTTACCC TTGCGTGGTG ATTTAGACGA TAGACCGAGA
CAACTCGTTT GCCACGAGTT TGGAAAAGCA GCCGAAACCC ATTGGGAATT GAGCCAACTT
GATGAAATGG CACGTACAGC CCGCGTATAT CTGTATCCAA AAACAGGCAG AACCCATCAA
CTCAGGGTTC ACTGCGCCCA CTCAGAGGGG CTAAATACAC CGATTGTCGG TGACGACCTC
TACGGCACTC GCGCCAATCG CCTGCATCTG CATGCGGATT TATTGATGCT TCAGCATCCC
GTTACCCGTG AGCGGATGCG CTTTCAGGTC GATCCTGATT TTTGA
 
Protein sequence
MHLQPSCFTS FTQAIDAYAL PQRFTFPFYY EPHPLCVLAA NELQHHLETQ HDWQHNFGLT 
GELTGAIGKM FGVLLVQNPQ GEVGYLSAFS GKLAEQNHWP RFVPPVFDML AKDNFFHAEN
LQINQINEQL FAVENHPDIS RLLTELETEQ AQAQAELAAH RQVMIDGRQS RKAQRNQLAA
QLAANPTDET LPENAITEAK LSQESINEKN QLRDIKRYWD ERIHVISQAL SQLTDERDAL
RQQRKRLSAA LQQKLFEQYR FLNIKGTEKS LNGIFNGTVE LTPPAGSGEC AAPKLLHYAF
KHGLKPLAIA EFWWGAPPKS EIRQHKQFYP ACLRKCQPIL GHMLEGLAVD DNPLLTNPAE
GKTLAILYQD DSMAIVNKPA EFLSVPGKEI EDSVYSRMRQ TFPHATGPLI VHRLDMSTSG
LMVIALTKEA HKQLQKQFIQ RTVTKRYVAL LAGMPAVMAN KQATGNISLP LRGDLDDRPR
QLVCHEFGKA AETHWELSQL DEMARTARVY LYPKTGRTHQ LRVHCAHSEG LNTPIVGDDL
YGTRANRLHL HADLLMLQHP VTRERMRFQV DPDF