Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_1058 |
Symbol | |
ID | 5372122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 1255679 |
End bp | 1257403 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640829251 |
Product | pseudouridine synthase |
Protein accession | YP_001365273 |
Protein GI | 152999592 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATCTTC AGCCTTCTTG CTTTACCTCT TTCACACAAG CCATTGATGC CTATGCCCTG CCGCAACGTT TTACTTTTCC TTTCTATTAC GAACCGCATC CATTATGCGT GCTTGCAGCC AACGAATTAC AACACCACCT CGAGACTCAG CACGACTGGC AACATAACTT TGGCCTAACG GGTGAGTTAA CTGGCGCCAT TGGCAAGATG TTCGGCGTAT TGCTGGTACA AAATCCGCAA GGTGAAGTCG GCTATTTATC GGCATTTTCG GGCAAATTAG CCGAGCAAAA CCATTGGCCA CGCTTTGTTC CACCTGTGTT TGATATGCTG GCTAAGGACA ATTTTTTCCA CGCCGAAAAT CTGCAAATCA ACCAAATTAA CGAGCAGCTG TTTGCAGTAG AAAACCATCC CGACATTTCG AGGCTATTAA CCGAGCTAGA AACTGAACAA GCTCAAGCGC AAGCCGAACT TGCCGCCCAC AGACAAGTGA TGATCGATGG CCGCCAATCT CGCAAGGCGC AGCGTAATCA ACTCGCAGCC CAATTGGCTG CCAATCCGAC TGATGAGACC TTGCCTGAAA ACGCAATAAC TGAAGCAAAG CTCAGTCAAG AAAGCATCAA TGAAAAGAAT CAGTTAAGAG ATATTAAACG CTATTGGGAT GAACGTATTC ATGTCATCAG CCAAGCGCTA AGCCAACTGA CAGATGAGCG TGACGCGTTA CGACAACAGC GCAAACGGCT CTCGGCGGCG CTGCAGCAAA AGCTGTTTGA GCAGTATCGG TTTTTGAATA TTAAAGGCAC AGAAAAGAGC CTTAACGGCA TATTTAACGG TACGGTTGAG TTAACGCCAC CCGCAGGCTC GGGCGAATGT GCCGCGCCTA AGTTGTTACA TTACGCCTTT AAACATGGTC TTAAGCCATT AGCTATTGCC GAGTTTTGGT GGGGCGCGCC GCCAAAATCT GAAATCCGCC AACATAAGCA GTTTTATCCC GCCTGCCTGC GAAAATGCCA ACCTATCTTG GGGCATATGC TCGAAGGGCT CGCAGTCGAT GACAACCCTT TACTTACCAA CCCCGCCGAA GGTAAAACTT TAGCCATCCT CTATCAAGAC GATTCGATGG CGATTGTAAA TAAACCCGCC GAGTTTTTAT CCGTGCCCGG CAAAGAAATT GAAGACTCAG TGTATTCGCG CATGCGCCAA ACCTTCCCCC ATGCCACAGG GCCGCTTATC GTCCACAGGC TCGATATGTC GACCTCGGGA TTAATGGTGA TCGCGCTGAC AAAAGAGGCC CATAAACAGC TGCAAAAACA ATTTATCCAG CGCACTGTGA CTAAACGTTA TGTGGCACTT TTGGCGGGAA TGCCTGCGGT AATGGCGAAT AAGCAAGCGA CGGGTAACAT CTCTTTACCC TTGCGTGGTG ATTTAGACGA TAGACCGAGA CAACTCGTTT GCCACGAGTT TGGAAAAGCA GCCGAAACCC ATTGGGAATT GAGCCAACTT GATGAAATGG CACGTACAGC CCGCGTATAT CTGTATCCAA AAACAGGCAG AACCCATCAA CTCAGGGTTC ACTGCGCCCA CTCAGAGGGG CTAAATACAC CGATTGTCGG TGACGACCTC TACGGCACTC GCGCCAATCG CCTGCATCTG CATGCGGATT TATTGATGCT TCAGCATCCC GTTACCCGTG AGCGGATGCG CTTTCAGGTC GATCCTGATT TTTGA
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Protein sequence | MHLQPSCFTS FTQAIDAYAL PQRFTFPFYY EPHPLCVLAA NELQHHLETQ HDWQHNFGLT GELTGAIGKM FGVLLVQNPQ GEVGYLSAFS GKLAEQNHWP RFVPPVFDML AKDNFFHAEN LQINQINEQL FAVENHPDIS RLLTELETEQ AQAQAELAAH RQVMIDGRQS RKAQRNQLAA QLAANPTDET LPENAITEAK LSQESINEKN QLRDIKRYWD ERIHVISQAL SQLTDERDAL RQQRKRLSAA LQQKLFEQYR FLNIKGTEKS LNGIFNGTVE LTPPAGSGEC AAPKLLHYAF KHGLKPLAIA EFWWGAPPKS EIRQHKQFYP ACLRKCQPIL GHMLEGLAVD DNPLLTNPAE GKTLAILYQD DSMAIVNKPA EFLSVPGKEI EDSVYSRMRQ TFPHATGPLI VHRLDMSTSG LMVIALTKEA HKQLQKQFIQ RTVTKRYVAL LAGMPAVMAN KQATGNISLP LRGDLDDRPR QLVCHEFGKA AETHWELSQL DEMARTARVY LYPKTGRTHQ LRVHCAHSEG LNTPIVGDDL YGTRANRLHL HADLLMLQHP VTRERMRFQV DPDF
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