| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1033 |
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| Symbol | |
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| ID | 5373261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 1230425 |
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| End bp | 1230988 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640829226 |
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| Product | pilin, putative |
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| Protein accession | YP_001365248 |
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| Protein GI | 152999567 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0234716 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGATCC AACATTCTGA TAAATTGATA CAACGACATC AAACGGGTTT CACCTTAATA
GAGCTTGTGG TAGTCATCAT AGTGCTCGGT ATTTTAGCGG TAGTGGCCCT GCCAAAATTT
ATCAATGTGC AGCAAGATGC GCAAATCGCC ACAGTCAAAG CCGCAGGCGG TGGCTTTAAG
TCAGCCATCA ATCTGGCGCG CTCCGTTTGG GCGGTAAAAG TGGGCTCAGG TCCAAAAGAA
GACTTACCCG TATTTGGCAC GGCGCAATCT GAACAAGTGG ATTTTAACGC CTTCGGCTGG
CCTGCACAGC ACTATATCTT TGGTAATGAA GCCTCACCGT CGCTTGATAA TGTCGAAGAC
TGTATCTCGG TATGGGAAGT GTTATTCCAA AATACTCAAC CGAGTGTCTC GCGCTTAAAT
GTTGATGCGA CAGAAACCGA CTACAAAGCC AGTTATACCA ATCCTGGCAA GTGCACTTAT
TTCTATCGAA CAAACGACAA ACTCTCGATC AGTTATGACT CCCAAACCGG AGTCGTCATT
ACCGACACAG ATCCCAATAG TTAA
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| Protein sequence | MMIQHSDKLI QRHQTGFTLI ELVVVIIVLG ILAVVALPKF INVQQDAQIA TVKAAGGGFK
SAINLARSVW AVKVGSGPKE DLPVFGTAQS EQVDFNAFGW PAQHYIFGNE ASPSLDNVED
CISVWEVLFQ NTQPSVSRLN VDATETDYKA SYTNPGKCTY FYRTNDKLSI SYDSQTGVVI
TDTDPNS
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