Gene Shew185_0880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0880 
Symbol 
ID5370278 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1040637 
End bp1043831 
Gene Length3195 bp 
Protein Length1064 aa 
Translation table11 
GC content50% 
IMG OID640829075 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001365097 
Protein GI152999416 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000190412 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGCGA TAACTATGTT CAAAGCGAGT GAAGTGCTGG CAGGCCGCTA CGATTCTGCC 
AATCTCGACG AACTGTTCAA AGCGATCAGC GACAACTACA TTGTCGATGA AGAACAATAC
TTGTCAGAGT TGATCCAACT AGTTCCCTCC AGTGATGAAG CCATAGCGCG CGTCACTCGT
CGTGCCCACG AACTGGTTAA CAAGGTTCGT CAATTCGATA AAAAAGGTTT GATGGTTGGC
ATAGATGCCT TCCTGCAACA GTACAGCTTA GAAACACAGG AAGGCATTAT CCTGATGTGT
TTAGCCGAAG CGCTACTGCG TATTCCCGAT GCGGCCACTG CCGATGCACT GATTGAAGAT
AAGCTTTCAG GCGCTAAGTG GGATGAGCAC ATGAGTAAGA GTGACTCTGT ACTCGTTAAC
GCATCGACCT GGGGCCTTAT GCTCACGGGT AAAATTGTTA AGCTCGATAA AAAAATTGAT
GGCACCCCAA GCAACTTACT GAGCCGCTTA GTTAATCGTC TCGGCGAGCC AGTGATCCGC
CAAGCCATGA TGGCCGCGAT GAAGATCATG GGTAAGCAGT TCGTGCTGGG CCGCAACATG
AAAGAAGCCC TGAAAAACAG CGAAGACAAG CGTAAGTTAG GCTATACCCA TTCATACGAT
ATGCTGGGCG AAGCGGCGTT AACTCGCAAA GATGCAGAGA AATACTATAC CGATTACGCC
AATGCGATCA CTGAGCTCGG TGCTCAAAGC TATAACGAAA ATGAATCACC GCGCCCAACG
ATTTCAATCA AGCTATCGGC ATTGCACCCA CGTTACGAAG TGGCCAATGA AGACCGCGTT
TTAACTGAAC TGTACGACAC AGTTATCCGC CTTATTACAC TGGCTCGCGG CTTAAATATC
GGTATTTCTA TCGATGCTGA AGAAGTCGAT CGCCTCGAGT TGTCACTGAA ACTGTTCCAA
AAACTGTTTA ATTCAGAAGC GGCAAAAGGC TGGGGATTAC TCGGTATTGT GGTTCAAGCT
TACTCTAAGC GTGCCCTGCC CGTACTGGTT TGGTTAACTC GTCTTGCCAA AGAGCAAGGA
GATGAAATCC CCTTACGTCT GGTAAAAGGC GCCTATTGGG ATAGCGAACT GAAATGGGCC
CAACAAGCTG GCGAAGCCGC TTACCCACTT TACACTCGCA AAGCCGGTAC TGACGTTTCT
TACCTCGCCT GCGCCCGCTA CTTGTTATCG GATGCGACTC GCGGCGCTAT CTACCCACAA
TTTGCTAGCC ACAATGCGCA AACCGTTGCG GCGATTTCAG ATATGGCGGG CGATCATCAC
CATGAGTTCC AACGCTTACA CGGCATGGGA CAAGAGCTGT ACGACACGAT TTTGTCGGAA
GCTGGCGCCA AATCGGTACG TATTTATGCC CCCATCGGTG CCCATAAGGA TCTACTGCCC
TACTTAGTGC GTCGTCTGCT GGAAAACGGG GCCAACACTT CGTTCGTCCA CAAGCTCGTC
GATCCTAAAA CCCCAATCGA CTCATTAGTG GTGCATCCGC TAAAAACGCT GACGGGCTAT
AAAACCCTGG CTAACAATAG AATCGTTTTA CCTGCCGATA TTTTCGGTAG TGATCGCAAA
AATTCCAAGG GACTCAATAT GAACATCATT TCCGAATCTG AGCCATTTTT CGCGGCAATA
GAACAGTTTA AAAATACCCA ATGGCAAGCA GGCCCTCTGG TTAACGGCAA AACCTTAACC
CGTGAGCACA AAACCATAGT CAGCCCATAC GACACCACCC AAACAGTGGG TCAAGTAGCC
TTTGCCGATG ATGCGGCCAT AGAACAAGCA CTCGCGTCTG CTGAAGCGGC GTTTGCCTCA
TGGGCACGTA CGCCGGTTGA AACCCGTGCC TCTGCGCTGC AAAAACTCGC TGACTTATTA
GAAGAAAACC GCGAAGAATT GATCGCCCTG TGTACCCGTG AAGCGGGCAA GAGCATTCAA
GACGGTATCG ACGAAGTACG TGAAGCCGTT GATTTCTGTC GTTACTACGC AGTACAAGCC
AAGAAAATGA TGGCGAAGCC TGAACTGCTT CCTGGCCCAA CGGGAGAGCT GAACGAACTG
TTCCTCCAAG GCCGTGGCGT ATTCGTGTGT ATCAGCCCAT GGAACTTCCC ATTGGCTATC
TTCCTCGGCC AAGTGTCTGC AGCATTAGCG GCAGGTAACA CAGTGATCGC GAAACCTGCG
GAGCAAACCT CGATTATTGG TTACCGTGCA GTACAACTTG CTCACCAAGC AGGTATTCCT
GTTGAGGTTC TGCAATTCCT ACCAGGTACG GGTGCGACTG TCGGTAGCGC AATTACAGCC
GATGAACGTA TCGGCGGCGT ATGCTTTACC GGTTCAACTG GCACTGCAAA ACTGATTAAC
CGTACACTGG CCAACCGTGA TGGCGCGATT ATTCCTTTAA TCGCCGAAAC TGGTGGTCAA
AATGCCATGG TAGTGGACTC AACCTCACAA CCTGAGCAAG TGGTTAACGA TGTCGTTTCA
TCGTCATTCA CTAGCGCAGG TCAACGCTGT TCAGCGCTGC GCGTGCTCTT CCTTCAAGAA
GACATCGCCG ATCGCGTGAT CGAAGTGCTG CAAGGCGCGA TGGATGAATT AGTGATTGGC
AACCCAAGCT CAGTGAAAAC TGACGTAGGC CCAGTGATTG ACGCCACCGC CAAAGCCAAC
TTAGATGCGC ACATCGACCA TATCAAGCAA GTCGGTAAGC TTATCAAGCA AATGCCGTTG
CCTGCTGGCA CTGAGAACGG TCACTTCGTT TCGCCCACTG CGGTTGAAAT CGATTCGATT
AAAGTGCTTG AGAAAGAACA CTTTGGCCCA ATCCTGCACA TTATTCGCTA CAAAGCAGCC
GAGCTAAGCC AAGTGATCAA CGAGATCAAC AGTACAGGCT TTGGCTTAAC CTTAGGTATC
CACAGCCGTA ACGAAGGCCA TGCCCTTGAA GTTGCAGATA AAGTGAACGT GGGTAACGTG
TATATCAACC GTAACCAAAT CGGCGCTGTA GTGGGTGTAC AGCCTTTCGG TGGTCAAGGC
CTGTCAGGCA CAGGTCCTAA AGCCGGTGGC CCACACTACT TAACCCGTTT TGTGACTGAA
AAGACTCGCA CTAATAACAT CACCGCTATC GGTGGTAATG CGACGTTGTT ATCACTGGGT
GATAGCGAAG AATAA
 
Protein sequence
MEAITMFKAS EVLAGRYDSA NLDELFKAIS DNYIVDEEQY LSELIQLVPS SDEAIARVTR 
RAHELVNKVR QFDKKGLMVG IDAFLQQYSL ETQEGIILMC LAEALLRIPD AATADALIED
KLSGAKWDEH MSKSDSVLVN ASTWGLMLTG KIVKLDKKID GTPSNLLSRL VNRLGEPVIR
QAMMAAMKIM GKQFVLGRNM KEALKNSEDK RKLGYTHSYD MLGEAALTRK DAEKYYTDYA
NAITELGAQS YNENESPRPT ISIKLSALHP RYEVANEDRV LTELYDTVIR LITLARGLNI
GISIDAEEVD RLELSLKLFQ KLFNSEAAKG WGLLGIVVQA YSKRALPVLV WLTRLAKEQG
DEIPLRLVKG AYWDSELKWA QQAGEAAYPL YTRKAGTDVS YLACARYLLS DATRGAIYPQ
FASHNAQTVA AISDMAGDHH HEFQRLHGMG QELYDTILSE AGAKSVRIYA PIGAHKDLLP
YLVRRLLENG ANTSFVHKLV DPKTPIDSLV VHPLKTLTGY KTLANNRIVL PADIFGSDRK
NSKGLNMNII SESEPFFAAI EQFKNTQWQA GPLVNGKTLT REHKTIVSPY DTTQTVGQVA
FADDAAIEQA LASAEAAFAS WARTPVETRA SALQKLADLL EENREELIAL CTREAGKSIQ
DGIDEVREAV DFCRYYAVQA KKMMAKPELL PGPTGELNEL FLQGRGVFVC ISPWNFPLAI
FLGQVSAALA AGNTVIAKPA EQTSIIGYRA VQLAHQAGIP VEVLQFLPGT GATVGSAITA
DERIGGVCFT GSTGTAKLIN RTLANRDGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS
SSFTSAGQRC SALRVLFLQE DIADRVIEVL QGAMDELVIG NPSSVKTDVG PVIDATAKAN
LDAHIDHIKQ VGKLIKQMPL PAGTENGHFV SPTAVEIDSI KVLEKEHFGP ILHIIRYKAA
ELSQVINEIN STGFGLTLGI HSRNEGHALE VADKVNVGNV YINRNQIGAV VGVQPFGGQG
LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DSEE