Gene Shew185_0828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0828 
Symbol 
ID5372700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand- 
Start bp979660 
End bp980070 
Gene Length411 bp 
Protein Length136 aa 
Translation table11 
GC content44% 
IMG OID640829023 
Productprepilin-type cleavage/methylation-like protein 
Protein accessionYP_001365045 
Protein GI152999364 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4967] Tfp pilus assembly protein PilV 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones58 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCCT TTAATCACAT AGGTAAAAAA CACCTTGGCT TTACCATGAC AGAAGTTTTA 
GTCTCACTCG TGGTATCAGT CACTTCATTG CTTGCACTGG CAAAAGCGCA GCTATCATCG 
CTACAACATG CCACCAATAG CTTTCAATAC ACAGTTGCCA CAGTGCAAGC GCAAAATGTC 
ATTGAACAGA TTTGGCCAAG GTTATGCGAA GTGCAAAAGC AACCCGCCCG CTTCGAAGAT 
ATCAATTTTA GAGCCAGTTT AAGCCAAGAT TTCCCCGTAG GCTTTGACTT AGTGTTACCC 
GCCACTTATC AAGACAACAT GGCAATTACT GTGACTTGGC AAGATGGTCG AGTCGATACC 
GATAATAGCG TCAGTCTTAA CGCCAGTTTT CCCCATCTGT GTAAGGCCTA A
 
Protein sequence
MKAFNHIGKK HLGFTMTEVL VSLVVSVTSL LALAKAQLSS LQHATNSFQY TVATVQAQNV 
IEQIWPRLCE VQKQPARFED INFRASLSQD FPVGFDLVLP ATYQDNMAIT VTWQDGRVDT 
DNSVSLNASF PHLCKA