| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0707 |
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| Symbol | |
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| ID | 5369715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 847791 |
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| End bp | 850214 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640828901 |
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| Product | ribonuclease R |
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| Protein accession | YP_001364927 |
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| Protein GI | 152999246 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.419789 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAAAG ACCCTCATTT TGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGC
CGTGAGTATA TTATCGATTA CTTACGTTCT CAGAAATCAC CTATCACTCG TGACAGTATT
GCCGCGGCGT TAAACATCCA AGAGGAAGAA CAGCTTGAGG CCCTGCGCCG TCGCCTACGT
GCGATGGAAC GCGATGGCGA ACTTGTGTTC ACCCGTGGGC AGAGCTATGG CTTGCCCGAG
AAAATGGATC TTATCCCCGG CACTGTACTC GGACACAGAG AAGGCTTCGG CTTTTTCAAA
CCCGATGAAG GCGGTGATGA CTTATTTATT TCGAACCGCG ATATGCTGAT GTATTTCCAC
GGTGATAAAG TGCTGGCGCA AAAAGCGGGC ACAGATCGTC GTGGTCGCCG CGAAGCGCGT
TTGGTGCGTT TGATCCAGCC GCGCAGTGCC GCGATTGTTG GCCGTTATCA TGTTGATAGC
GGTATGGCAT TTGTCATTGC CGATGATAAG CGTATTACCC AAGAAATCTT AGTCGCGAAT
GAAGATCGCA ACGGCGCCCG TCAAGGCGAT GTGGTTGTGG TTGAATTAAC GCGTCGCCCA
GGTCGTTTTG TTAAGGCTGC GGGTAAAGTG ACTGAAGTGC TTGGTAAGCA AATGGCGCCG
GGGATGGAAA TCGAAATCGC CCTGCGTAAC TACGACTTAC CCCATACTTG GTCACCAGTG
ATCGAGAAGA AACTGCGCCG AATTCCCGAT GAAGTGACCG ACGCCGATAA AGTCGGCCGT
GTGGATTTAC GTCATCTGCC ATTAGTGACT ATCGACGGCG AAGACGCCCG CGATTTTGAC
GATGCCGTGT ATGCGGAGAA AAAAGCCGGT GGCGGCTGGC GTTTATGGGT TGCGATTGCT
GACGTTAGTT ATTATGTTCG CACCGATTCG GCTTTAGATA CTGAAGCGCG TGCCCGTGGT
AACTCAGTGT ATTTCCCATC ACAAGTGATC CCTATGCTGC CGGAGAAAAT CTCCAACGGC
CTATGTTCGC TTAATCCTCA CGTCGACCGT TTATGTATGG TCGCTGAGAT GACAGTGTCT
GCCAAAGGCA AGTTGTCGGG TTATAAGTTT TATCCAGCGG TGATGTATTC CCATGCCCGT
TTCACTTATA CCCAAGTGGC GGAGATGTTA GAAGGTGGCC CGATTGCGCC AGAGCATGAA
GCCTTGTTCC CGCATCTGCA GTGTTTACAG TCATTGTATT TAGCGCTAGA TGAGCAAAGA
GCTGAGCGCG GTGCAATTGC GTTTGAAACC ATGGAAACGC AGTTCATTTT CAATGAGCAG
CGCAAGATTG ATAAAATCGT GCCGCGTGGC CGTAATCAAG CACATAAAAT CATTGAAGAA
TGCATGATTT TAGCCAACGT TTCTGCAGCT AAATTTGTGA AGAAACACAA AGGCGACGTG
CTGTACCGAG TGCATGAAGC GCCATCTGAG CAAAAGTTGG CGAACTTTAA AGAGTTCCTT
GCTGAGCGTG GTTTGACTAT GCCTGGCGGA CTTGAGCCAA CGCCGTCAGA TTACCAGAAC
GTGATGCTGC AAATTGCCGA CCGTCCCGAT GCTGAACTTA TCCAAGTGAT GTTACTGCGT
TCTATGCGTC AGGCCATTTA CACCCCAGAT AATGAAGGTC ACTTCGGTCT AGCCTTAGAA
GAATATGCGC ATTTTACCTC GCCCATTCGC CGTTATCCGG ATTTAGTCTT ACATAGAGTT
ATCCGTTATT TACTGGCGAA GGAAAGAGGC GAAGCCACAG AAAAGTGGAC GCAGGATGGT
GGCTACCACT ATCAACTCGA TGAACTCGAC CAATTGGGCG AAGAGTGTTC GACTACGGAG
CGTCGTGCCG ATGAAGCGAC TCGTGATGTT AGCGATTGGC TCAAGTGCGA GTTTATGCAA
GATCACGTCG GCGATACCTT CGAAGCTGTG ATTGCCTCAG TGACGAGCTT TGGTTTGTTT
GTGCGCTTAA ATGAGCTGTT TATCGATGGC TTAGTGCATA TCTCAAGCCT AGGCAGTGAT
TACTACCAAT TCGATCCTAT GCGTCAACGC CTTATCGGTG AGCATACAGG CCAAGTCTAT
CAAGTGGGCG ATCCTGTGAC GGTTAAGGTC GCTGCAGTTA ACTTAGATGA CAGACAGATT
GATTTAGTCA TGCTGGGTGA TGACGGCAAA GGTGGTAAGC GTAAAGCATC TGCCAGCCGT
GATAAGCCGA TGACTGCCCG TGAGCGTGTT AATCGCGAAG GTGCTAAGCA AGGCAAAGCG
GGTAAAACCG CAACGCCTAG CACTAAGGCT GAAGCTGGCA AAGCCAAACC TAAGGCTAAA
GCGGGCACTA AAGCGAAAAA AACAGCAGTA AAAGATCCGG CTAAAAAGCC AAAAGCCGCT
AAGCGGAGCA CGAGAAAGAA ATAA
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| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIDYLRS QKSPITRDSI AAALNIQEEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLIPGTVL GHREGFGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG TDRRGRREAR LVRLIQPRSA AIVGRYHVDS GMAFVIADDK RITQEILVAN
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSPV
IEKKLRRIPD EVTDADKVGR VDLRHLPLVT IDGEDARDFD DAVYAEKKAG GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTVS
AKGKLSGYKF YPAVMYSHAR FTYTQVAEML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET METQFIFNEQ RKIDKIVPRG RNQAHKIIEE CMILANVSAA KFVKKHKGDV
LYRVHEAPSE QKLANFKEFL AERGLTMPGG LEPTPSDYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKERG EATEKWTQDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTSFGLF
VRLNELFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLVMLGDDGK GGKRKASASR DKPMTARERV NREGAKQGKA GKTATPSTKA EAGKAKPKAK
AGTKAKKTAV KDPAKKPKAA KRSTRKK
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