Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0562 |
Symbol | |
ID | 5369635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 648245 |
End bp | 650398 |
Gene Length | 2154 bp |
Protein Length | 717 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640828767 |
Product | AAA ATPase |
Protein accession | YP_001364793 |
Protein GI | 152999112 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAATGCTG CCTTAAATGA AGAGCTATTT CGCGTCACCA GTATCCCTTA CAACTCATCA ACGATGGTGA TATTCATCGG CACACCGTTA AGGAAAAACT CTTACAGAGC CAATAGCGGT AAATACTATG TCACGATAAA AGTAGATCCT GACACATTGC CTGTAGAACC TGCAATTGGC CAGTATTGGT TAGTTAAAGG AGACCGTCAT ATCAAAAACA TGGATATAGG GGATTACGTA ATGCAACAGC ATACTTACCA ATCACCTGTC CATGTTGAAT GCAGGTTGCC AGAAACTGGT GAGCAGCTAA TTCAATTCAT TGCGAGAGAA AACGACTTCA AGGGGATTGG TGAAAGTAAA GCCAGAGCAC TCTGGGAGCT CCTAGGTAAA GATTTTCATG CAACATTAAA CAACGACACT CCTGAATCAA GAATATTGCT TAAAAGCGTT CTGAGCGAGG ATTCCATAAC CGCATTATTT GAAGGGTATG CTAAATACAA AAATCTTGCC TACTGCAATT GGATGTCCGA ACACAAGATA CCTGCCAGTG TTCAGCAGCG TTTGCTGAAA TATCACAGTG AGCAATCCAT TGAAGCAATT AAACAGAATC CTTATGTGTT AATTGGTTTT GGCATGAGTT TTACAGAGGT GGATTCTATT TCTCAAGCGA AGCTTGAGGT CACAACAAAT GATGACAGGC GATTAAGTGC GGCGCTTGAA ATTGCGATAC GTAAAGAGAT AGAGAAAGGG CATACTTATA CGATACAAGC TAATTTACGC CCTCATTTAA CCAAGCTACT AAAAGATAAA GATTTGGTCG CCAAAGCGTT TCATGCAGGA CACGATAAAG CTCAGTATTT ATTAAATCAC ACAACAGGAA CTTACCATCC CACAGCTCAG TTATTGATGG AAAATGTTGT GACTAAACGA CTCAAAGCAC TTGCTAGTCA AAACAACTTA TATGACGAAC ATGCAAATTC AGCATATTGC TCTGCTGTTG GGGAGCTACC TTATGAGTTA ACAAAGAAGC AAGAAGAAGC GGTCACGACA TGCCTAGATA ACGCAGTAAG CTGTATCACC GGTGGTGCTG GCACAGGTAA AACGACAGTG CTAAGAACTG CGTTGCGTGC CTATTATGCA ATGGGGTTTG AAATACATGC AGTAGCCTTA AGTGGTCGTG CGGCAATGCG CTTACATGAG TCGATTGGTT TTATCACTTC AACAATTGCA AAGTTACTGC GAAATAAACC TATTGATTCA GAAAAACAAA AACATCTGCT CGTCATTGAC GAAGCCAGCA TGATTGATTT GCCGACCATG TACCGTTTAG TAAATCACAT TCACCCCTCA GTGAGAATTA TCTTAACTGG CGACCCAAAT CAGCTTCCAC CAATTGGCTG CGGTAAAGTA CTAGCGGATA TTGTTGAATC TAAAGTGATT GCAAATACTT TACTGGACAT TGTGAAGCGT CAGGAAGGCT ATACGGGTAT TCCTGAGTAT TCGAAATTAA TAAATCAAGG GGAAGTACCA GAGCAACTTA CCACTGGCGC AATTTATTTT CACGAAACAG ATAAAAAAGA GATATCTCAA GTTTGTTGTA ATTTGTATCA ACAATCTCCT GAGAACAGCC GCGTGATGGC TTCAACCAAA GCACTGGTTG CTGAAATCAA TAAGCTAACT CAAGAGGCTG TAAATCATAG TGGCAGCAGA CTCGAATTTG AAATGAATGG TGAGCTGTTC TTTCAACATC TACGACTTAA TGATTCAATC TTGTTTACGC AAAATCACTA TGATAAAGGT ATTCAGAACG GTTCGCTTGG TGCCCTAACA AGCGTCGTGG CCTCTGGGGA TAGTTATGGT GAAGTGACAC TCGATACTGG AGATAAGCTT ATAGTGACTC AAGCCGTACT TGATTGCATG GAATTGGGTT ATGCAATAAC TCTTCATAAG GCTCAAGGTT CTCAGTTCCC ACGTATTATC ATTGCTTTGC AGAAAGGTAA AATTGTTGAC CGAGCATGGC TCTATACCGC TATCACCAGA GCTGAAAGTG AAATTCATAT TGTGGGGGCT GAAGCTGACT TAAAAACCAT TACTGCAGCT CCTAGTCATT CAAATAAGCG TAATAGTTAT CTTGTTGATC TTTTAAAAAG ATAA
|
Protein sequence | MNAALNEELF RVTSIPYNSS TMVIFIGTPL RKNSYRANSG KYYVTIKVDP DTLPVEPAIG QYWLVKGDRH IKNMDIGDYV MQQHTYQSPV HVECRLPETG EQLIQFIARE NDFKGIGESK ARALWELLGK DFHATLNNDT PESRILLKSV LSEDSITALF EGYAKYKNLA YCNWMSEHKI PASVQQRLLK YHSEQSIEAI KQNPYVLIGF GMSFTEVDSI SQAKLEVTTN DDRRLSAALE IAIRKEIEKG HTYTIQANLR PHLTKLLKDK DLVAKAFHAG HDKAQYLLNH TTGTYHPTAQ LLMENVVTKR LKALASQNNL YDEHANSAYC SAVGELPYEL TKKQEEAVTT CLDNAVSCIT GGAGTGKTTV LRTALRAYYA MGFEIHAVAL SGRAAMRLHE SIGFITSTIA KLLRNKPIDS EKQKHLLVID EASMIDLPTM YRLVNHIHPS VRIILTGDPN QLPPIGCGKV LADIVESKVI ANTLLDIVKR QEGYTGIPEY SKLINQGEVP EQLTTGAIYF HETDKKEISQ VCCNLYQQSP ENSRVMASTK ALVAEINKLT QEAVNHSGSR LEFEMNGELF FQHLRLNDSI LFTQNHYDKG IQNGSLGALT SVVASGDSYG EVTLDTGDKL IVTQAVLDCM ELGYAITLHK AQGSQFPRII IALQKGKIVD RAWLYTAITR AESEIHIVGA EADLKTITAA PSHSNKRNSY LVDLLKR
|
| |