Gene Shew185_0552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0552 
Symbol 
ID5369974 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp633163 
End bp635085 
Gene Length1923 bp 
Protein Length640 aa 
Translation table11 
GC content49% 
IMG OID640828757 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001364783 
Protein GI152999102 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones49 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATCCG ATGAAAGAAC TTTCCGTGAA CTCGGCCTAT CCGAGAATTT GTTGCGTGCT 
CTTGACGAGC TAGGTTATGA AAAACCGACG CCAATCCAAT CAGCCAGTAT TGATCCACTT
ATGGCTGGCA AAGATATTTT AGGTCAAGCG CAAACAGGTA CAGGTAAAAC TGGCGCCTTC
GCTTTACCAC TATTAAACAA AGTTACCAGC CAAACTACAC CGCAAATTTT AGTCTTAGCA
CCAACACGTG AATTAGCCGT GCAGGTTGCT GAAGCGTTCA GTAGCTATGC CAAATTTATG
AAGAATTTCC ACGTTCTTCC TATCTATGGC GGCCAAAGCA TGCAACAACA GTTGAATGCC
CTGAAACGTG GCCCACAAGT TATCGTTGGT ACGCCAGGTC GTGTTATGGA CCATATGCGT
CGCGGCACCT TGAAACTCGA CTCATTACAA GCTTTAGTGC TTGATGAAGC CGATGAAATG
TTAAAAATGG GCTTCATCGA TGATATCGAA TGGATCCTTG AGCACACGCC AAGCGAGCGC
CAACTGGCGT TATTCTCTGC CACTATGCCA GAGCAAATTA AGCGTGTTGC TAACCAGCAC
TTACGTAATC CTGTACATGT TCGTATCGAA TCAAGCCAAA CTACGGTTGA GTCAATCGAA
CAGCGTTTCG TACAAGTATC ACAACACAAC AAACTTGAAG CTTTAGTACG TGTATTAGAA
GTTGAAAACA CTGAAGGTGT GATCATATTC GTGCGTACTC GTAACTCATG TGTTGAGTTA
GCTGAGAAGT TAGAAGCCCG CGGTTATGCT TCATCACCAC TACACGGTGA CATGAACCAG
CAAGCCCGTG AGCGTGCAGT TGACCAACTG AAACGTGGCA AGTTAGACAT TCTGATCGCG
ACTGACGTTG CGGCCCGTGG TCTTGACGTT GAGCGTATCG GTCACGTTGT AAACTACGAT
ATTCCGTATG ATGCTGAAGC TTATGTACAC CGTATTGGCC GTACAGGCCG TGCTGGCCGT
ACTGGTATGG CGATCCTGTT TGTAACTAGC CGTGAAATGC GCATGCTGCG CACCATCGAG
CGTTCAACGA ACAGCCGCAT TTCACCAATG AAAATCCCAA GCCCAGAGAC TGTTGCAGAA
CGTCGTCTGT CTCGCTTAGG TGAGCAATTG GCTGAAACAA TCAACGGCGA TTTAGATTTT
ATGAAAGAAG CTGTTGCTCA ATTATGCCAA CAGTTAGAAG TCGATACTGA TCTGCTAGCC
GCTGCATTAT TACAGCAAGT TCAGCAAGAA CGTCCTTTGC AATTGCCAGC AATTCAAGAA
CGTGTTCGTG ATGAACGCAG TGAGCGCACT GAACGTAGCG ACCGCGGAAG TGATCGTAAT
GACCGTGGTG GTGAGCGTGG TGAACGCAGA AGTCGCGAAC CGCGTCCAAT GCCAGCAAGC
TTAGGCTCAG CTGAAGCGTT GAAAGACAAT CCAGATTTGA AAATGTGCCG TTACGTGATC
GACGTAGGTC GTGAGAATGG TGTAGGTGTG GGTAACATCG TTGGCGCTAT CGCGAACGAA
GCTAACATCG ACAGCCGTTA CATTGGCGCA ATCCAACTTT ACGATGCAGT GACCACTGTT
GACCTGCCAG ACGGCATGCC AAAAGACGTG TTACAGCACC TACGTAAAGT ACGTGTTTGT
GGCAAGCCAT TGAACATCCG CGAAGCTGGC GATCAAGTAT TTGTTGATTC AGGCCGTAGT
GCTCGTTCAG ACCGCCCTGC TGGTGACCGT AAACCACGCG GCGATCGTCC AACGGGTGAC
CGCCCAGCTG GTGACCGTAA GCCACGCGCT GCGTCTACTG GTGACAAGCC ATTTGCTGAC
CGCAAACCAC GTGCAGACAA ACCTGCCGGT GAGCGTAAGC CACGTAAACC ACGTGAAGAC
TAA
 
Protein sequence
MSSDERTFRE LGLSENLLRA LDELGYEKPT PIQSASIDPL MAGKDILGQA QTGTGKTGAF 
ALPLLNKVTS QTTPQILVLA PTRELAVQVA EAFSSYAKFM KNFHVLPIYG GQSMQQQLNA
LKRGPQVIVG TPGRVMDHMR RGTLKLDSLQ ALVLDEADEM LKMGFIDDIE WILEHTPSER
QLALFSATMP EQIKRVANQH LRNPVHVRIE SSQTTVESIE QRFVQVSQHN KLEALVRVLE
VENTEGVIIF VRTRNSCVEL AEKLEARGYA SSPLHGDMNQ QARERAVDQL KRGKLDILIA
TDVAARGLDV ERIGHVVNYD IPYDAEAYVH RIGRTGRAGR TGMAILFVTS REMRMLRTIE
RSTNSRISPM KIPSPETVAE RRLSRLGEQL AETINGDLDF MKEAVAQLCQ QLEVDTDLLA
AALLQQVQQE RPLQLPAIQE RVRDERSERT ERSDRGSDRN DRGGERGERR SREPRPMPAS
LGSAEALKDN PDLKMCRYVI DVGRENGVGV GNIVGAIANE ANIDSRYIGA IQLYDAVTTV
DLPDGMPKDV LQHLRKVRVC GKPLNIREAG DQVFVDSGRS ARSDRPAGDR KPRGDRPTGD
RPAGDRKPRA ASTGDKPFAD RKPRADKPAG ERKPRKPRED