Gene Shew185_0530 details

Gene Information

• Locus tag: Shew185_0530
• ID: 5373777
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 607811
• End bp: 608488
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640828735
• Product: pentapeptide repeat-containing protein
• Protein accession: YP_001364761
• Protein GI: 152999080
• COG category: [S] Function unknown
• COG ID: [COG1357] Uncharacterized low-complexity proteins

Plasmid Coverage information

• Num covering plasmid clones: 46
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATCAC AGAAAGAAGT GCCACAGCTT ACACAATCGC AGCTTGCATC ATCACAGTTT 
GCGCCATTCC AACTCGCGCA AAGCGCGGTT TTGCAGGGCA ATAGTTTTTT ATCAAAACAG 
TTTAATGGCT TGTCGGAATT AGCCCAAGAG CTACAGGGCA TAGAGTTTGA GGATTGCTGC 
TTTCAAGACT GTCATTTTAG CGAGAGCGTT TTTCGTAAAT GTAAGTTTAT CGATTGTCGC 
TTTGTACGCT GCAACTTGAG CTTAGTGAAA GTGCCCCAGT GCCAGTTCAG CGGGGTCGAG 
TTTGAAGAGT GTAAGTTAGT CGGTATCGAT TGGACCCGCG CCGCATGGTC GCGTTTATCC 
TTTGCCGCAC CTTTTTCCTT TAAGCAATGC ATTCTAAACG ACTGCTCATT TTTAGGCTTG 
TCCCTCGATG AAATCATCAT CGAAGAGTGC AAAGCCCACG ATGTGGATTT TCGCGAGGGC 
AGTTTCAACC AAGCCAATTT CACCTACACG GATTTTAGTC ATAGTCTGTT TGGCCGAACT 
CAATTATTGG AGGCGGATTT CAGCGAGGCC TCAAATTACG ATATCGACAT TTTTAACAAT 
AAAATCAAAG GCGCTAAGTT TAGCCGCGAC GAAGCGATTC GCCTGCTCAA CTGCCTCGAT 
ATAGAGCTAA TGGATTAA 

 

Protein sequence

MSSQKEVPQL TQSQLASSQF APFQLAQSAV LQGNSFLSKQ FNGLSELAQE LQGIEFEDCC 
FQDCHFSESV FRKCKFIDCR FVRCNLSLVK VPQCQFSGVE FEECKLVGID WTRAAWSRLS 
FAAPFSFKQC ILNDCSFLGL SLDEIIIEEC KAHDVDFREG SFNQANFTYT DFSHSLFGRT 
QLLEADFSEA SNYDIDIFNN KIKGAKFSRD EAIRLLNCLD IELMD