| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0493 |
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| Symbol | |
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| ID | 5373225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 557453 |
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| End bp | 558007 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640828698 |
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| Product | MSHA pilin protein MshD |
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| Protein accession | YP_001364724 |
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| Protein GI | 152999043 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0090654 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGAATTA ATCCTCGGTT GCTATTGGGC AAAGCATCAG TAAAAACATC CAAAAAAGCC
AAACCACAGC AGGGTTTTAC CCTTATCGAA TTAGTCATTG GTATGTTGGT GATTGGCATT
GCGATAGTGA TGCTAACCAG CATGTTATTT CCCCAAGCTG ATCGTGCGGC CAGCACCTTA
CATAGAGTAC GCAGTGCTGA GCTTGCCCAT TCGGTGATGA ATGAAATCTG GGGCAAGCGT
TACGATCAAA ACACTAATGC CAATGGTGGA ACGCCGGCCT GTGGTAGTCC GCTAGGAAGC
AATTGTTCCA CTTCCTTGGG TCCAGAGGTG GGTGAGAGTC GTAACGACTT TAACGATGTG
GACGATTACA ACGGCTTAAA TGAAACAGCG ACTATGCTCA ACTCAACCCA AACCTATGCC
GCTGCTTATC CTAACTATCA ATTAAGTGTC ACTGTCGCCT ATGGGCCTGC GCCCAATACT
AAGCTAGTGA CCATTAATGT GACGACGCCG GACAATGAAG TGATCACTTA CAATCTGGTA
AGGAGCAATT ACTAA
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| Protein sequence | MRINPRLLLG KASVKTSKKA KPQQGFTLIE LVIGMLVIGI AIVMLTSMLF PQADRAASTL
HRVRSAELAH SVMNEIWGKR YDQNTNANGG TPACGSPLGS NCSTSLGPEV GESRNDFNDV
DDYNGLNETA TMLNSTQTYA AAYPNYQLSV TVAYGPAPNT KLVTINVTTP DNEVITYNLV
RSNY
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