| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0490 |
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| Symbol | |
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| ID | 5373171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 555506 |
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| End bp | 556123 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640828695 |
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| Product | MSHA pilin protein MshB |
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| Protein accession | YP_001364721 |
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| Protein GI | 152999040 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000000965015 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAACTA AGCAAACAGG TTTCTCATTA ATAGAGCTTG TGATTGTGAT TGTGATTTTA
GGGCTACTCG CCGCAACCGC GATCCCACGA TTCTTAAATG TCACCGATGA TGCTGAAGAC
GCCAGTGTTG ACGGCGTGGC CGGTGGTTTA TCGACTGCCG TTAGCTTTGT GCGTTCGCAG
TGGGAAGTCG ATGGGCGCCA AAATAGCAGT GTGATCTTAG ATGGTACGTC AGTTTCGCTC
GATCCTCGTT TTGGTTATCC AACGGGAACT TCAGTGACGG ATGTGACTGC AATGACTGAT
GCGAGTTGCC AACAAGTATT TAATACCGTG CTGCAGAGCG CTCCTCGTAA TGTGCTCTAC
ACTCAAGATG CGCGTAATCA ACGTTATACC GTGCGCGTGA TTGATGGCGC AGGTGGTAGC
GCTAATTCGA TTGCAGGCAC TGTCGTTGCT GGTTTAGATT TATGTGTTTA TCACCAAGTG
GCTTCACTGG TGCTTGATCA AACCACTGGC GTACCCACTC CTACACCGGA TTTATCAACA
GCTGGTGCGA AAGGAATCGT GTATAACCCA GGCACAGGTA AAGTGCTAAG CTTTACCCAA
ACGCCATTTG TGCCATAA
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| Protein sequence | MKTKQTGFSL IELVIVIVIL GLLAATAIPR FLNVTDDAED ASVDGVAGGL STAVSFVRSQ
WEVDGRQNSS VILDGTSVSL DPRFGYPTGT SVTDVTAMTD ASCQQVFNTV LQSAPRNVLY
TQDARNQRYT VRVIDGAGGS ANSIAGTVVA GLDLCVYHQV ASLVLDQTTG VPTPTPDLST
AGAKGIVYNP GTGKVLSFTQ TPFVP
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