| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0487 |
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| Symbol | |
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| ID | 5372653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 551902 |
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| End bp | 553662 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640828692 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001364718 |
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| Protein GI | 152999037 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCA GATTAAAAAT GCGTTTGGGC GATCTGTTAG TTCAAGAAGC CATTATTACT
GAAGCGCAGT TGCAACAGGC GTTAGGCGAG CAGCGCAATA CGGGCAAAAA ACTGGGCCGT
ACCCTCATTG ATCTGCAATC GATTACAGAG CATCAGTTGC TGCAGTTTTT GTCGCAACAA
TTGAATGTGC CTTTGCTTGA TATCAGTAAA ATGCCAATCC CTGCGGAAGT CGTGCATCTT
ATTCCTGAGG TGCAAGCCCG ACGTTTCCGC GCTTTAGCGG TTGAAGACAG GGGCGATAGC
GTACTGGTAG CTATGAGTGA TCCAGCCGAT TTGCAGGCGC TCGATCACCT CGAAATGCTT
ATCGCACCTA AGCGTTTGAA GTTAGCTGTA GCGCCCGAGC AGCAACTGCT ACAAGCGTTT
GATAACTTAT ATCGCCGTAC AGAGCAAATT GCTCAGATCG CCGGTAAGCT CGAAGAAGAA
TACGCCGCCG ATGAGATGTT CGATTTAGCC AGTCTGACTT CTGGGGACAG TGACAATGAA
ACTACAGTGG TTAAGCTGCT GCAGTCGATT TTTGAGGATG CGGTGCAAAT GCGCGCCTCG
GATATCCATA TCGAACCCGG TGATAAAGCC CTACGTATTC GCCAGCGTAT CGATGGCCAG
CTACACGAAA CGATTCTGAA TGAAGTTAAT ATTGCCGCAG CTTTAGTATT GCGACTTAAG
TTGATGGCTG GACTCGATAT TTCTGAAAAA CGTTTGCCGC AGGATGGCCG TTTCCACATG
GAAATAAAAG GTCATCATAT CGATGTGCGT ATGTCGACTA TGCCGATTTA CCACGGCGAA
TCTGTGGTAA TGCGTTTACT CGACCAATCG GCGGGTTTAT TGACCCTAAA CGAAACCGGT
ATGCCGCCTG CTATTTTGGC GCGTATTCGT AAACAGATTA AACGTCCCCA CGGCATGTTG
TTGGTCACTG GTCCCACGGG TAGCGGCAAA ACGACCACCT TGTACGGTAT TTTGAGCGAG
CTCAACACCG CCGACCGTAA GATCATCACA GTGGAAGATC CGGTCGAGTA TCAATTGCCA
CGGATAAACC AAGTGCAAGT TAACCATAAG ATTGGCTTGA ACTTTTCCAA CGTATTGCGC
ACCACCTTGC GTCAAGACCC CGATATCATC ATGGTCGGGG AAATGCGTGA TCAAGAAACC
GTTGAGATTG GCCTGAGGGG CGCATTAACG GGTCACTTTG TGCTATCGAC CTTGCACACT
AACGATGCGG TCACCAGTGC GCTGCGTTTG CTCGATATGG GCGCCGCCAG TTATTTAGTT
GCCAGTGCCT TAAGGGTGAT TATTGCCCAG CGTTTAGTGC GACGTGTTTG TCATAACTGT
GGCGTTGAGT ATCAGCCGAC ACCGCAGGAA AAAGCCTGGC TGAGTAGCGT GAGTCGCAAA
GATTTTAGCC ATGCAAACTT TAGAATCGGT ACCGGTTGCC AGAGTTGTAA CGGCAGTGGT
TATCGTGGCC GTATTGGTAT TTTTGAGATC CTCGAGCTCG ACGAAAAGAT GATCGATGCG
ATGCGTACCG GTAATCCGCA GGATTTCGCC AGAGCCGCGT TGCAGAGCCC TAACTTTACC
CCGCTCGCCG AGTCAGCGTT GCAATATTTG AGTGAAGGCA TGACGACCAT TGAAGAGGTG
GCTAAGCTGG TAGAGGACGT GAGTGAATCT CAGATACCTT TGTCGAAGGA TATTATTAGC
CAACAAGGGG TTGAGGCGTA A
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| Protein sequence | MKPRLKMRLG DLLVQEAIIT EAQLQQALGE QRNTGKKLGR TLIDLQSITE HQLLQFLSQQ
LNVPLLDISK MPIPAEVVHL IPEVQARRFR ALAVEDRGDS VLVAMSDPAD LQALDHLEML
IAPKRLKLAV APEQQLLQAF DNLYRRTEQI AQIAGKLEEE YAADEMFDLA SLTSGDSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGDKA LRIRQRIDGQ LHETILNEVN IAAALVLRLK
LMAGLDISEK RLPQDGRFHM EIKGHHIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPPAILARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLNFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC GVEYQPTPQE KAWLSSVSRK
DFSHANFRIG TGCQSCNGSG YRGRIGIFEI LELDEKMIDA MRTGNPQDFA RAALQSPNFT
PLAESALQYL SEGMTTIEEV AKLVEDVSES QIPLSKDIIS QQGVEA
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