Gene Shew185_0479 details

Gene Information

• Locus tag: Shew185_0479
• ID: 5372250
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 543342
• End bp: 545285
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640828684
• Product: regulatory protein CsrD
• Protein accession: YP_001364710
• Protein GI: 152999029
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTCA CCCGAATGTT AACTACAAAA TTAACCAGCT TTTGGTTAAT GTCATTAGCC 
GCTATTGCCT TCGTATTTTT GCTGAGCGCT ATGATGAGTT TCGTGCAGCT GACCTATAAA 
TTTCAGCAGC AGAAAGTCGC CGAACTCGAA ACTATGTTAG TGGACCAATA TCAACACCAA 
CCCGATTGGG ATTTGGAAGC TTGGCTGCCG CCCATGCTGC TCGCCTACAA TGCTGTTGAT 
TTTCGGCTGA CCTTGAAAGA TGAAGTGATC TTTGCCTATG AAGGCAATCT CACTACGCAA 
AATGCCATAG TGTATGACCA TGTGTTAGAT CCAAAATCTG GTCTGCGTAT GCAGCTGACC 
TTGACCCAAC CCTTCGAGCA TTACACTTTT AGTTGGTATG AAATCCTCAT CCTGTTGGTC 
GGTGTGTTAG CTGTGGCTGC CTTAGTGCGT TTTGGCTATT TATGGTTTTC CCAGCAATTG 
GATGGCATTG AAGAATTAGC CTTACGCAGT CGATTGATCT TGCAAGGTAA GCACGAGCAA 
GCACTCGCGA CTCCCGGAAA TGGCAAGCCA AGGCTGATTA ACCGTGCTTT GACCAAGTTG 
TTAGAAGAAT TACAAGACGC ACAAAAAGAG CGCGGTCGTT TTGACAAGTT CATTCGTTCT 
AATACCTTTC TCGATGCGGA AACGCGCATT GGTAATCGAC TTTTCTTAAA TAACCGTCTC 
GACGCCCTTA GTCATAATCA GGCGATGCTC GCCCATGGGG TGATTTATTT ATTAGAGATG 
GATGATCTGG ATTTACTGCA GCAATCCCAA GGTGAAGCGG TAACCAAAGA GTTATTAAAC 
TCAACAGTTA ACGCGATAAG CCAACTGTTA CAAACCCAAG CTAACAGTAT TTTTGCCCGT 
CGTTCCCACA ATCAATTTGC CATAGTCGTG CCGCAAATCT CGTTAATCGA AGCTGACCAA 
TTTGCCAGTA AGTTGCTTAA GATATGTTTG AGCCAGCCTT TACCCGAAGT CGAGAATAGC 
GATAACTTTT TCCACCTCGG ATGCGCTTAT TTTACCGCAG GCGACAATGC GGCGCAGTTA 
ATTGAAGAAG CCGATATGGC TTTGAGGGCG GCACAATTAC AGGGTAACAG TAATTGGTTT 
ATGTACGACA AAGGCGCGAT TGATGAAGAG TTTGCTAAAG GCTCGGTGCG TTGGCGTAGC 
TTTTTAGAAA ACGCGTTAGT GCAAAGGCGA TTCTTCCCCT TTAGCCAGCC GATAATTGAT 
TCAGATGGTA ATGAGCACCA TAAAGAGATA TTTACTCGGG CGCGGGATAA TCAAGGAGCG 
TTAATTCGTG CCACACTGTT TATTCCAATG GCGAATAAAT GTGGTTTAAT GCCGCAAGTC 
GAACGGCAAA TTATTGAGCG GGTATTATTG TTACTGTCGA ATGAATTAGC GGACGGCGTG 
TCGAATACTC AAAAAAATAA GAAATCAGCG CCACAGATAT ACAGTATAAA TCTGAGTTTG 
GATTCGCTAA TGAGTCGAGC TTTTACCCAA TGGCTAAAAA CGACGCTGTT AGAATATCGT 
CATCTGACCA CGCGACTGAT TTTCGAAGTG TCGGAAGATA TCGTTATTCA ACATCAAGAA 
AAGTTGCAGC CTAAATTAGA TATGATCCGT AAAATGGGCG CGAGATTATG CGTTGATCAT 
GTAGGCCAGC AGGTCGTTGG CACTTACTAT ATTCGTGAAT GTCATTTTGA TTTAATTAAG 
CTACATAGAT CGATTGTGCG GCATATTCAT TTACGCCCAG AAAACCAATT ATTCATCCGT 
AGCTTGATTG GCGGTTTGTA TCGAACGGAA GTGCAAGTTT GTGCCGAAGG GGTTGAAGTC 
TTCGAAGAAT GGCAGACACT GCAAATCCTT GGCGTTGGCG CAGCGCAGGG AATGTATTTC 
AGTGACCCCA TAGAGGCTAA GTAA 

 

Protein sequence

MKFTRMLTTK LTSFWLMSLA AIAFVFLLSA MMSFVQLTYK FQQQKVAELE TMLVDQYQHQ 
PDWDLEAWLP PMLLAYNAVD FRLTLKDEVI FAYEGNLTTQ NAIVYDHVLD PKSGLRMQLT 
LTQPFEHYTF SWYEILILLV GVLAVAALVR FGYLWFSQQL DGIEELALRS RLILQGKHEQ 
ALATPGNGKP RLINRALTKL LEELQDAQKE RGRFDKFIRS NTFLDAETRI GNRLFLNNRL 
DALSHNQAML AHGVIYLLEM DDLDLLQQSQ GEAVTKELLN STVNAISQLL QTQANSIFAR 
RSHNQFAIVV PQISLIEADQ FASKLLKICL SQPLPEVENS DNFFHLGCAY FTAGDNAAQL 
IEEADMALRA AQLQGNSNWF MYDKGAIDEE FAKGSVRWRS FLENALVQRR FFPFSQPIID 
SDGNEHHKEI FTRARDNQGA LIRATLFIPM ANKCGLMPQV ERQIIERVLL LLSNELADGV 
SNTQKNKKSA PQIYSINLSL DSLMSRAFTQ WLKTTLLEYR HLTTRLIFEV SEDIVIQHQE 
KLQPKLDMIR KMGARLCVDH VGQQVVGTYY IRECHFDLIK LHRSIVRHIH LRPENQLFIR 
SLIGGLYRTE VQVCAEGVEV FEEWQTLQIL GVGAAQGMYF SDPIEAK