| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0433 |
|---|
| Symbol | |
|---|
| ID | 5371457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 490219 |
|---|
| End bp | 491136 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640828638 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001364664 |
|---|
| Protein GI | 152998983 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAT CTGCCCGCGC CGCCCAACCT TCTTACATAG TGCTTCCTGT GAATGTCACA
GATATACCCA CAGTGTTTGC CTTTCTCGCG CAGCATTTTG CCCGCATAGG TGAAGATGTG
TGGCGTCAGC GGATCCTCGA TGGAAAAGTG CATTGGCGCG ATGGCAGTTT GATCGCCTTG
GACACCGAAT ATCGTCCTGC AGCACGGGTG TATTACTACC GTGAAGTGCC GGTCGAAGCG
AAAATTCCCT TTGAAGAACA GATCCTATTC CAAGATGACA ATGTCATTTT GGCCTATAAG
CCACACTTTT TACCTGTGAC CCCAAGTGGC AACTATGTGA ACGAATGTCT GGTGCATAGA
CTGAGATTAC GCACTGGTAT AGACACTATC GCGCCCGCTC ATAGGCTTGA CCGTGAAACC
GCAGGGGTGA TCTTGATGAC GGTCGCTCCC GAAACCCGCG CCCTTTATCA TCAATTATTT
ATCGACGATG CTATTCGTAA AGACTATCAA GCGATTGCCA AGCTGACACC TGAAATTATT
CAGCAATATC AACAGGGAAG CTTAACGTTA CCCCTGCATT GGACGGTAAA AAACCGCATG
CAGCCGAGCG ACCCGAGTTT TACCATGAAA ATCGTTGAAG GCGAGGCGAA TACCCATTCC
GAAATCAGTC TGGTGGCCAT AAAAGGCGAT CTTGGTTTGT TCCACCTGAG CCCAATTACC
GGCAAAACTC ACCAGTTGCG GGTGCATATG CAAAGCTTAG GTATGCCATT GTTAAACGAC
AGATTTTATC CAAGCTTATT ACCCAAAGGG CCGGATAAGT TTGCGACGCC TCTTAAGTTG
ATGGCACAGC GTTTACGTTT CATCGATCCT GTGAGCGGGA TCCATCACGA CGTGCAATGT
GAGGGTTTTG CGTTTTAG
|
|---|
| Protein sequence | MTASARAAQP SYIVLPVNVT DIPTVFAFLA QHFARIGEDV WRQRILDGKV HWRDGSLIAL
DTEYRPAARV YYYREVPVEA KIPFEEQILF QDDNVILAYK PHFLPVTPSG NYVNECLVHR
LRLRTGIDTI APAHRLDRET AGVILMTVAP ETRALYHQLF IDDAIRKDYQ AIAKLTPEII
QQYQQGSLTL PLHWTVKNRM QPSDPSFTMK IVEGEANTHS EISLVAIKGD LGLFHLSPIT
GKTHQLRVHM QSLGMPLLND RFYPSLLPKG PDKFATPLKL MAQRLRFIDP VSGIHHDVQC
EGFAF
|
|---|
| |