| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0406 |
|---|
| Symbol | lpxC |
|---|
| ID | 5372064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 455842 |
|---|
| End bp | 456762 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640828605 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_001364638 |
|---|
| Protein GI | 152998957 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000000104832 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTTC AAAGAACTGT TCAGAAAATG GTGAAAACTA CTGGTGTCGG ATTGCATTCT
GGCAACAAGG TCACTTTGAG CATAATGCCC GCGCCCGTTA ATTCAGGGAT CGTACTCGTG
CGCACTGATT TGAGTCCTGC CGTCGCCATT CCAGCGAAGG CGGAGCAAGT TCGTGAAACC
ACTATGTGTA CGGCACTTGT CAATGACGAA GGTATTCGTA TCTCGACCAT TGAGCATTTA
TTTGCAGCAC TTGCGGGTTT AGGCATAGAT AACGCCGTAA TCGAAGTGGA CGCGCCTGAA
ATTCCTATTA TGGATGGCAG TGCGAGCCCA TTTGTCTTCT TATTGCAGTC TGCGGGTATT
AAAGAGCAGG CCGCACCTAA GAAGTACTTA AAGATTAAGC GCCCTGTGCG TGTTGAAGAT
GGCGACAAAT GGGCCGAGCT GAAACCCTTT AAAGGTTTTA GAGTCAATTT TAAAATTGAC
TTCGCGCACC CAGAAATCGC TCGTAGCCAA CAGCATGTGG TGATGGACTT TTCAACGTCT
GCTTTCGTGA AAGATATCAG CCGCGCCCGT ACTTTTGGGT TTATGCGTGA TATCGAATAT
CTGCGAGCCA ACAACCTAGC GTTGGGCGGC AGCATGGAAA ACGCAGTTGT ACTTGATGAA
TATCGCGTCC TTAATCCCGA CGGCCTGCGT TATGAGGACG AATTTGTTAA GCACAAAATT
CTAGATGCGT TTGGTGATTT ATATGTGGCA GGACACGCTA TTTTAGGTGA GTTCACTGCG
TATAAAACCG GTCATGCACT GAACAACCAA TTGGTGCGTG CTTTACTGGC GCAACAGGAT
GCGTGGGAGT TGGTCAGCTT TGAAAAAGAA GCCGATGTTC CCGTTAGCTT TACCGTGCCA
GGTGGCGCTG TATTTGCTTA A
|
|---|
| Protein sequence | MIFQRTVQKM VKTTGVGLHS GNKVTLSIMP APVNSGIVLV RTDLSPAVAI PAKAEQVRET
TMCTALVNDE GIRISTIEHL FAALAGLGID NAVIEVDAPE IPIMDGSASP FVFLLQSAGI
KEQAAPKKYL KIKRPVRVED GDKWAELKPF KGFRVNFKID FAHPEIARSQ QHVVMDFSTS
AFVKDISRAR TFGFMRDIEY LRANNLALGG SMENAVVLDE YRVLNPDGLR YEDEFVKHKI
LDAFGDLYVA GHAILGEFTA YKTGHALNNQ LVRALLAQQD AWELVSFEKE ADVPVSFTVP
GGAVFA
|
|---|
| |