| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0288 |
|---|
| Symbol | |
|---|
| ID | 5373325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 327644 |
|---|
| End bp | 328336 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640828489 |
|---|
| Product | pseudouridine synthase Rlu family protein |
|---|
| Protein accession | YP_001364522 |
|---|
| Protein GI | 152998841 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCGAA TCATAGCCGA TGAGGCTGAC TTCCTTGTTA TCTCCAAATC AGCCAAAGTG
CATTTTCACA GTCAGGACGG AACAGCGGGC GTGGTGGCGC AGGCTGAGCA AGATTTAGGG
ATTAAGCTTT TTGCCGTGCA TAGATTAGAC ACGCCCACGT CCGGTCTGTT GATTCTGGCC
AAAAGCGCCG TCGCTGCCAA GCAATTTACA GAGCTATTTA CCGCCCATAA AGTGCAGAAA
TATTACCTCG CCCTCGCGAA AGGTAAGCCG AAGAAGAAGC AAGGCTGGGT GATTGGTGAC
ATGGCAAAGT CGCGTCGTAG TATGTTTAAA CTGCTGCGCA CTAAAGAAAA TCCAGCGATT
ACGCAGTTTT TTTCATTAAG TGTCAGTGAG GGATTGCGTT TATATTTGCT TAAACCCCAT
TCGGGTAAAA CCCACCAATT AAGAGTCGCC TTGGCAAGCT TAGGTGTGCC GATTTTAGGC
GATGATTTAT ACGGTGGCGC TGTGGCGGAT CGTTGCTATC TACATGCCTA CTGTCTGCAT
TTTCGCTATG GCGATGAAGC GACTGGCTGG CGTGATTACG CGTATAGGGA TGTGCCGACT
CAAGGTGAAC ATTTTGCCGC TGAAGGTGTG ATTGAGGCGC TGGTTGAATG GCGTGAACCC
GACACTTTGG CTTGGCCGGC GAAAGGGGAT TAA
|
|---|
| Protein sequence | MYRIIADEAD FLVISKSAKV HFHSQDGTAG VVAQAEQDLG IKLFAVHRLD TPTSGLLILA
KSAVAAKQFT ELFTAHKVQK YYLALAKGKP KKKQGWVIGD MAKSRRSMFK LLRTKENPAI
TQFFSLSVSE GLRLYLLKPH SGKTHQLRVA LASLGVPILG DDLYGGAVAD RCYLHAYCLH
FRYGDEATGW RDYAYRDVPT QGEHFAAEGV IEALVEWREP DTLAWPAKGD
|
|---|
| |