| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0272 |
|---|
| Symbol | |
|---|
| ID | 5373309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 312291 |
|---|
| End bp | 313751 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640828473 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001364506 |
|---|
| Protein GI | 152998825 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCAATA ACGCTTGGAA TGATAAGAAT AAATTTATTT GGCTGCTCTC TGTTTTGCTT
TTAGTCGCCT TTTTAGTGAC CAGTGGTATC AGTTACAAGG TGGCCCATGA CTCACTGAGT
CAACAAATCG AGAGTAATAC CCTCCCGCTC ACAAGTGACA ATATTTACTC AGAAATTCAA
CAGGATCTAC TGCGACCTAT CTTTATTTCA TCCTTGATGG CGCAGGATAC TTTTGTTCGC
GATTGGACAT TAAGCCACGA GCAAGAGCCA GAAAAACTGA TCCGTTACCT TAAGGAAATC
CAAGAGAAAT ACGATACAGT CACCAGTTTT TTTGTGTCAG AGAAAAGTCG GCATTATTAC
CACTCCACGG GCATTTTAAA ACAAATCCAA GATGTTGAGC CCGATGATGC TTGGTACTTT
CGAGTGCGAT CTTTACCCGA ATCTGAGCAT TATGAGGTCA ATATTGATGC TGATACGGCG
GACCGCAGTA AAACAACCGT ATTCGTGAAC TATAAAGTTT TTGATTTTGA AGGCAAATTT
ATAGGCGTTA CCGGTGTGGG TTTGGCGGTT GAAAAGGTTA AGTCTCTTAT CGAGCTTTAT
CAAAAACGTT ATAACCGTCG TGTGTTCTTT ACCGATCGGC AGGGCAATGT CACTTTGCAT
GGCGATGAAT ATGATGGTGC GGATTCGCTG CAAACCAGTC CCGGGCTTGA AAATTTAGCG
ACGCGTATTT TAACCAGTCC AAGTGCGGCT TTTAGCTACC AGAGAAATGG TAAAACCGTT
TATCTCAACA GCCGTCTAGT CCCTGAATTT AAGTGGTATT TGATTGTTGA GCAGGAAGAT
GCGCCACAGG AGCGGGAGTT ACTGAATACT TTTTGGGGCA ACTTGGGCTT AAGCCTAATG
GTGACCCTAG GGATTTTATT CATCTCCAAC ATGACCTTAG GCCGTTATCA GCGCAAATTA
GAAGTAATGG CGTCTACCGA TAAGCTTACT GGCGCCGCTA ACCGTCAGGT ATTTGATGAG
TACTTTAGGC AGGCGTTAGA TAAGGCTAAG TTGGCACAAT CGCCGATTTC AATACTCTTG
CTGGATATTG ACCACTTTAA AAAAGTGAAC GACAGCTATG GGCATGGAAT TGGTGACTTA
GTATTAAAAA CCATGACGAA TATGCTGCGT GGTGCGCTGC AGCAAGAGGA TATCTTATGT
CGTTGGGGCG GCGAGGAGTT CTTGATTTTA CTTCCGGGGA TGGATTTAAC CCGAGCGGCA
GAACTGGCTG AACAGATCCG TGAGCTTATT TTCCAGCGGG AAATTAAAGT AAATGGATTA
CATATTTCTA TTACTGCCAG TATTGGCGTC GCCGAGCATC AGGCGCAAGA GCCTGCAGAA
GATCTGATCA AGCGTGCCGA TCTGGCCTTG TATCAGGCTA AGGAAGCCGG TCGAAATCAA
GTGGTGTTAA ATCATTCATA G
|
|---|
| Protein sequence | MCNNAWNDKN KFIWLLSVLL LVAFLVTSGI SYKVAHDSLS QQIESNTLPL TSDNIYSEIQ
QDLLRPIFIS SLMAQDTFVR DWTLSHEQEP EKLIRYLKEI QEKYDTVTSF FVSEKSRHYY
HSTGILKQIQ DVEPDDAWYF RVRSLPESEH YEVNIDADTA DRSKTTVFVN YKVFDFEGKF
IGVTGVGLAV EKVKSLIELY QKRYNRRVFF TDRQGNVTLH GDEYDGADSL QTSPGLENLA
TRILTSPSAA FSYQRNGKTV YLNSRLVPEF KWYLIVEQED APQERELLNT FWGNLGLSLM
VTLGILFISN MTLGRYQRKL EVMASTDKLT GAANRQVFDE YFRQALDKAK LAQSPISILL
LDIDHFKKVN DSYGHGIGDL VLKTMTNMLR GALQQEDILC RWGGEEFLIL LPGMDLTRAA
ELAEQIRELI FQREIKVNGL HISITASIGV AEHQAQEPAE DLIKRADLAL YQAKEAGRNQ
VVLNHS
|
|---|
| |