Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0231 |
Symbol | |
ID | 5373263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 265945 |
End bp | 267924 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640828428 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_001364465 |
Protein GI | 152998784 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF [TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000335449 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCCCAG AACTTGGACA CTTTGCGCTG ATAATAGGGG TGGCTTTTGC ATTCTTATTA ATCAGCGTCC CCCTAATAGG TGTTGCCCGT AAAGATCAAT ACCTTGTTAG GTATGCTTGG CCGTTAACGT ACGGAATGTT CTTTTTTATC ACTGTATCAG TTGTCGTGCT GGCCTATAGC TTTGCCGTCG ATGATTTCTC AGTCGCTTAT GTGGCACATC ATTCTAATTC TCAGTTACCT ATCTTCTTTA AGATTTCGGC CGTATGGGGC GGTCATGAAG GGTCACTGTT GTTCTGGGTG TTTGCTTTAT CGACTTGGGC TGCAGCGGTT GCCTTATTTA GTAAAGGTTT AGAGGAAGTG TTTACTGCGC GTGTACTGGC AGTATTAGCA CTGATCGTGA TTGGCTTTAG CTTATTCATG CTACTCACCT CTAGCCCATT CGAACGTTTG TTCCCGATCC CTGCCGAAGG TCGTGACTTA AACCCTATGC TGCAGGATGT GGGGTTAATC TTCCATCCAC CTATGCTGTA TTTAGGTTAT GTGGGTTTCT CGGTGAGCTT TGCATTTGCG ATTGCCGCGC TGATGAGCGG TCGTCTCGAT TCTGCATGGG CTCGTTGGAC TCGTCCTTGG ACCTTAGCCG CTTGGATCTT CCTAACTGGA GGTATCGCGC TAGGTTCTTG GTGGGCATAT TATGAATTAG GCTGGGGCGG TTGGTGGTTC TGGGATCCTG TTGAGAACGC CTCTTTCATG CCTTGGTTAG TGGGTACTGC GCTTGTTCAC TCTTTGATTG TGACCGAGAA ACGCGGCGCC TTCCGTAATT GGACCGTATT ACTGTCTATA TTCGCTTTCT CTTTAAGTTT GCTTGGTACC TTTATTGTTC GCTCAGGCGT ATTAACCTCA GTACATTCAT TCGCAGCCGA TCCAAGCCGC GGTATGTTTA TTCTGTTGTT ACTTGGCTTA GCGATTGGCG GTTCATTAAC ACTGTTTGCC TTCCGCGCCA GTGAAATGAG CAGTCCAGCC CGTTTCGAGC TGAAGTCTAA AGAAACCATG CTATTGGTCT GTAACGTGTT ACTGACTGTT GCCGCAGGTA CTGTGCTATT GGGTACACTC TATCCATTGC TCATCGATGC ACTCGGCATG GGTAAAATTT CTGTAGGACC TCCATACTTC AACGCTGTAT TTGTGCCTAT CGTATTAGTC TTATTTGGCT TTATGGGTAT TGGTCCAATT ATCCGTTGGA AAAAATCGAA AGCAGGCGAG CTTAGGCGTC AGCTATTGAT CCCTGCAATG ATTGCTGCGG CTATCGGTAT TGTGACGCCA TTTATCGTCG ATGGTGTATT CAATACTTGG GTTGCCTTTG GTATTGCAGC GGCTTCTTGG ATTATCCTAG CGACAGCAAG AGCGGCCTAT AACATGGTCA AGTCGAAAGA AGGTGATATC AGCATCAGCC GTATGGGCCG TAGTCAGCTG GGCATGATCT TCGCGCATCT TGGTATTGCT GTGTCTGTGA TTGGTGCCAC TATGGTGTCG AATTACTCGA TTGAGAAAAG TGTTCGCATG GGACCTGGTA TTAGCCAAGA GCTTGCGGGT TATACCTTTA AGTATCTGGA GACCAAAAAC GTAGTGGGTC CTAACTACAC TGCAATGCAG GGACAGATAG AAGTCTACAA AGGTGATGAG CTGCTGACAT TACTCAAGCC AGACCGTCGT CAATATAATG TGCGTACTAT GGACATGACA GAAGCGGGTA TCGACTGGGG TCTATTCCGT GACTTGTATG TGACCATGGG CGATCCAATT ACCAGCACTG AATTTGCGGT TCGTTTGAAC TACAAACCGT TCGTGCGTTG GTTATGGTTT GGGGCAATTT TCATGATGAT TGGTGGATTC TTCGCGGCAT CGGATAAACG TTACCGTGCG AAAGTCACTG CAGCTGTCGC GCCTTCGGCC GAAAAGGCAA AATTGGCAAC GGCTCAATAA
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Protein sequence | MIPELGHFAL IIGVAFAFLL ISVPLIGVAR KDQYLVRYAW PLTYGMFFFI TVSVVVLAYS FAVDDFSVAY VAHHSNSQLP IFFKISAVWG GHEGSLLFWV FALSTWAAAV ALFSKGLEEV FTARVLAVLA LIVIGFSLFM LLTSSPFERL FPIPAEGRDL NPMLQDVGLI FHPPMLYLGY VGFSVSFAFA IAALMSGRLD SAWARWTRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA RFELKSKETM LLVCNVLLTV AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGIGPI IRWKKSKAGE LRRQLLIPAM IAAAIGIVTP FIVDGVFNTW VAFGIAAASW IILATARAAY NMVKSKEGDI SISRMGRSQL GMIFAHLGIA VSVIGATMVS NYSIEKSVRM GPGISQELAG YTFKYLETKN VVGPNYTAMQ GQIEVYKGDE LLTLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI TSTEFAVRLN YKPFVRWLWF GAIFMMIGGF FAASDKRYRA KVTAAVAPSA EKAKLATAQ
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