| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0221 |
|---|
| Symbol | |
|---|
| ID | 5372316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 258202 |
|---|
| End bp | 259191 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640828418 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_001364455 |
|---|
| Protein GI | 152998774 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00144572 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TTGATATCGA GCAGGTTAAC
TCAACACGTG CCAAGGTTAC ATTGGAACCA CTTGAGCGTG GTTTCGGCCA CACTTTAGGT
AACGCGTTGC GTCGCATCCT ATTGTCGTCT ATGCCCGGCT GCGCGGTTAC CGAAGTCGAG
ATTGACGGTG TACTGCACGA ATACAGCAGT AAGGAAGGCG TTCAAGAAGA TATCCTTGAG
ATCTTGTTAA ACCTGAAAGG GTTAGCAGTG ACTATCGAGG GTAAAGACGA GGCTATGCTT
ACGTTGAGCA AGTCCGGCGC AGGCCCTGTC ATCGCAGCAG ATATCACGCA TGATGGTGAT
GTCACTATCG TGAATCCTGA TCATATTATC TGTCACCTGA CAGGTAACAA TGATATCAGC
ATGCGTATTC GCGTTGAGCG TGGTCGTGGC TATGTACCAG CATCTGCTCG TGCACAGACT
GAAGACGATG ATCGCCCAAT CGGCCGCTTG CTGGTTGATG CTTCTTTCTC GCCAGTTGCA
CGTATTGCCT ACAATGTAGA AGCAGCACGT GTAGAACAGC GTACTGACTT AGATAAACTC
GTTATCGATA TGACCACAAA CGGTACTATC GATCCTGAGG AAGCTATCCG TCGTTCTGCA
ACTATTCTGG CTGAACAGCT AGATGCGTTT GTTGAATTAC GTGACGTGAC TGAGCCAGAG
CTGAAAGAAG AGAAACCGGA ATTCGATCCG ATTCTGCTGC GTCCTGTCGA CGATTTAGAG
CTAACTGTAC GTTCGGCTAA CTGCTTGAAA GCCGAAGCGA TTCATTACAT CGGAGATCTG
GTACAGCGCA CTGAAGTTGA GTTGCTGAAG ACCCCTAACT TAGGTAAGAA ATCTCTTACT
GAAATAAAGG ACGTTTTAGC TTCTCGCGGA CTGTCGTTAG GTATGCGTTT GGAAAATTGG
CCTCCAGCCA GTTTAGCAGA CGACCTATAA
|
|---|
| Protein sequence | MQGSVTEFLK PRLVDIEQVN STRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV TIEGKDEAML TLSKSGAGPV IAADITHDGD
VTIVNPDHII CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDASFSPVA
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE
LKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPASLADDL
|
|---|
| |