Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_0190 |
Symbol | |
ID | 5369463 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 236911 |
End bp | 241128 |
Gene Length | 4218 bp |
Protein Length | 1405 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640828387 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_001364424 |
Protein GI | 152998743 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.87384 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TAACGGCATC AAAATTGGTC TGGCATCGCC TGATCTGATC CGTTCTTGGT CTTTTGGTGA AGTTAAGAAG CCAGAAACCA TCAACTACCG TACCTTCAAG CCTGAGCGTG AAGGTCTGTT CTGTGCGCGT ATCTTTGGCC CAGTCAAAGA TTACGAATGT TTGTGCGGTA AGTACAAACG TTTGAAGCAC CGTGGTGTTA TTTGTGAAAA GTGTGGCGTT GAAGTAACCC AAACTAAAGT ACGTCGTGAG CGTATGGGTC ACATCGAACT GGCTAGCCCA GTTGCGCACA TTTGGTTCTT AAAATCACTA CCGTCCCGTA TCGGCTTAAT GTTGGATATG ACGCTGCGTG ATATCGAACG CGTACTGTAT TTTGAATCAT TTGTCGTGAT CGAGCCTGGC ATGACCAGCC TTGAACGTGG CCAAATGCTG ACAGAAGAAA CTTATCTGGA TGCATTAGAA GAATACGGTG ATGAGTTCGA AGCTAAAATG GGTGCCGAAG CAGTGCTTGA ACTGTTACGT GCTATAGATT TAGCGAAAGA AATCGAACAA ATGCGTGAAG AATTGCCGTC AATCAACTCT GAGACTCGTC GCAAGAAAGT GACTAAACGT CTTAAGTTGA TGGAAGCATT CTACACTTCA GGCAACAAGC CTGAGTGGAT GATCTTAAAA GTACTGCCTG TGTTACCACC TGACTTACGT CCGCTGGTAC CGCTCGATGG CGGCCGCTTC GCGACTTCAG ATCTTAACGA CCTGTATCGC CGCGTGATCA ACCGTAACAA CCGTTTGAAG CGTCTGTTAG ATTTAGCTGC GCCAGACATT ATCGTACGCA ACGAAAAGCG TATGTTACAA GAGTCTGTTG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCTATTAC CGGTTCTAAC AAGCGTCCTC TGAAATCTTT GGCTGATATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG AACTTATTGG GTAAGCGCGT CGACTATTCT GGTCGTTCGG TAATTACCGT AGGTCCTACT CTACGTCTGC ACCAATGTGG TCTTCCTAAG AAGATGGCAC TGGAACTGTT CAAGCCATTC ATCTATGGCA AGCTTGAAGG TCGTGGCTTA GCTACTACCA TCAAAGCGGC TAAGAAGATG GTTGAGCGTG AAGTGGCGGA AGTATGGGAC GTTCTGGATG AAGTGATCCG CGAACATCCA GTGATGCTCA ACCGTGCACC AACACTGCAC AGACTGGGTA TCCAAGCGTT CGAGCCAGTA CTGATTGAAG GTAAAGCAAT CCAGTTACAC CCACTCGTTT GTGCGGCATA CAACGCCGAC TTCGACGGTG ACCAAATGGC GGTACACGTA CCGTTAACAC TGGAAGCGCA GCTTGAAGCC CGTGCCCTGA TGATGTCTAC CAACAACATC CTGTCACCAG CCAACGGCGA GCCTGTTATC ACCCCGTCTC AAGACGTGGT ATTGGGTCTG TACTACACCA GCCGTGAGCG TATTAACGGC CGTGGTGAAG GTATGGCATT TATGTCTGTT GCTGAAGTTG AAAAAGCTTA CGCAACTGGC GCTGCTGAAC TGCATGCCCG CGTTAAAGTA CGTATCACTG AAACCATTAT TGGTGACACT GGTGAACGTA CTGAACAACG CCGTATCGTT GATACGACTG TGGGTCGTGC ACTGCTGTCA CTTATTCTGC CAGCAGGTTT GTCATTTGAT CTGGTTAACC AGAACATGGG CAAAAAGCAG ATCTCTAAAC TGTTGAACAC TTGTTATCGT CAACTGGGTC TGAAAGATAC TGTTATCTTC GCTGACCAAT TGATGTATAC CGGTTTCCGT TTTGCAACCA TCTCTGGTGC CTCTGTAGGT ATCGATGACA TGGTTATTCC AGACGAGAAA TACACCTTAG TTGCTGATGC AGAAGCGGAA GTTCTTGAAA TTCAAGAGCA GTTCCAATCT GGTCTAGTTA CAGCCGGTGA GCGTTACAAC AAAGTTATCG ATATCTGGGC AAGTGCCAAC GAAAAAGTTT CTAAAGCTAT GATGGAAAAC CTGTCAACTG AGACAGTGAT TAACCGTGAT GGTGTTGAAG AGAAACAAGC CTCGTTTAAC AGCATCTATA TGATGGCTGA CTCAGGCGCT CGTGGTAGTG CCGCACAGAT CCGTCAGTTG GCGGGTATGC GTGGTCTGAT GGCTAAGCCT GATGGCTCAA TCATTGAAAC GCCAATTACC GCTAACTTCC GTGAAGGTCT AAACGTACTC CAGTACTTTA TTTCTACTCA CGGTGCGCGT AAAGGTCTAG CCGATACGGC ATTGAAGACA GCGAACTCGG GTTACCTGAC ACGTCGTCTT GTAGACGTTG CACAAGATTT AGTGGTTATC GAAGACGATT GTGGTACTCA CGAAGGTCTA ACCATGAAGC CGCTGATTGA AGGTGGTGAT GTGGTTGAGC CGTTACGTGA ACGCGTACTG GGTCGTGTGG TTGCGCTTGA TGTGTTCTAT CCAGGCACTG AAGACGTACT CGCACCACGT AACACGCTAC TCGACGAAGC CTGGTGTGAC AAGTTAGAAG AATATTCAAT CGACGAAGTG ATTGTACGTT CTGTTATTTC TTGTGATACT GATTTCGGTG TGTGTGCAGC CTGTTACGGT CGTGACTTGG CACGTGGTCA TATCATTAAC CACGGTGAAG CAATCGGTGT TGTGGCAGCA CAATCTATCG GTGAACCAGG TACACAGTTA ACGATGCGTA CGTTCCACAT CGGTGGTGCG GCATCAAGAG CGTCTGCAGA AAACAATGTC CAAGTGAAAA ACTCGGGTTC ATTGAAACTG CATAATGCTA AGCATGTTAC TAACAGTGAC GGCAAACTGG TTATCGTTTC TCGTTCTTCT GAACTGGCCG TTATTGACGA GCTGGGTCGT GAGAAAGAGC GTTATAAAGT GCCATACGGT ACTGTGCTCG AGAAGCTAGA AGAAGCGGCT GTTGAAGCGG GCGATGTTAT CGCTAACTGG GATCCACATA CTCACCCAAT CATTTCTGAA GTGGCGGGTA GTATCAAGTT CGTAGACATG ATTGACGGTG TCACTATGAC ACGTCAAACA GACGAACTAA CGGGTCTGTC ATCAATCGTG ATCCTTGACG TTGGTCAGCG TGGTACTGCG GGTAAAGAAA TGCGCCCAAT GATCCGTCTG CTTGGCGCTA ATGGTGCTGA CTTGATGATC CCTGGTACTG AAGTACCAGC ACAGTACTTC TTACCTGGTA GTGCGATCGT TAACTTGGAA GATAACGCGC AAATCAACGT GGGTGACGCT TTAGCTCGTA TTCCTCAGGA ATCGTCTAAA ACACGCGACA TCACCGGTGG TCTGCCACGC GTTGCTGACT TGTTCGAAGC GCGTAAGCCA AAAGAGCCTG CTATTCTGGC GGAAATCTCT GGTACCATCT CGTTTGGTAA AGAGACCAAA GGTAAGCGTC GTTTGGTGAT TACACCTGCT GATGGCGGCG ATCATTATGA AGAGATGATC CCTAAGTGGC GTAACTTAAA CGTGTTCGAA GGTGAAAAAG TCGAACGTGG TGAAGTTATC GCTGACGGTC CAGAAGCGGC ACACGACATT CTGCGTCTTC GTGGTATCCA CAACGTAGCA AACTACATTG TGAACGAAGT ACAGGACGTT TACCGTCTGC AAGGCGTGAA GATCAACGAT AAGCATATCG AAGTGATCAT CCGTCAAATG CTGCGTAAGT GTCTTATCAC TTCTGCCGGT GACACTGACT TCCTCGAAGG GGAACAAGCT GAAGTGTCAC GCGTGAAGAT CGCTAACCGC GAACTGATCG CCCAAGGTAA AGTGCCTGCG ACCTTCGAAC GTGAACTACT GGGTATTACT AAAGCATCTC TGGCAACAGA ATCCTTTATC TCAGCAGCAT CGTTCCAAGA AACTACGCGC GTACTGACCG AAGCCGCCGT AGGTGGTAAG AGCGATCAAT TACGTGGTCT GAAAGAAAAC GTTATCGTTG GCCGATTGAT CCCAGCCGGT ACTGGTTACG CTTATCACAA GACTCGTAAT GAAGCGCGTG CGAAGAAAAA CGAACCTGTA GTAGTGAATA AGATCACTGC AAGTGAAGCC GAACAGAACT TGGCCGATCT CTTAAACCTG GCTGGTAGCC AAGATTAA
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Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEETYLDALE EYGDEFEAKM GAEAVLELLR AIDLAKEIEQ MREELPSINS ETRRKKVTKR LKLMEAFYTS GNKPEWMILK VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVAEVWD VLDEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMAFMSV AEVEKAYATG AAELHARVKV RITETIIGDT GERTEQRRIV DTTVGRALLS LILPAGLSFD LVNQNMGKKQ ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR FATISGASVG IDDMVIPDEK YTLVADAEAE VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSTETVINRD GVEEKQASFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL GRVVALDVFY PGTEDVLAPR NTLLDEAWCD KLEEYSIDEV IVRSVISCDT DFGVCAACYG RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNSGSLKL HNAKHVTNSD GKLVIVSRSS ELAVIDELGR EKERYKVPYG TVLEKLEEAA VEAGDVIANW DPHTHPIISE VAGSIKFVDM IDGVTMTRQT DELTGLSSIV ILDVGQRGTA GKEMRPMIRL LGANGADLMI PGTEVPAQYF LPGSAIVNLE DNAQINVGDA LARIPQESSK TRDITGGLPR VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGGDHYEEMI PKWRNLNVFE GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM LRKCLITSAG DTDFLEGEQA EVSRVKIANR ELIAQGKVPA TFERELLGIT KASLATESFI SAASFQETTR VLTEAAVGGK SDQLRGLKEN VIVGRLIPAG TGYAYHKTRN EARAKKNEPV VVNKITASEA EQNLADLLNL AGSQD
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