| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0189 |
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| Symbol | rpoB |
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| ID | 5369462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 232795 |
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| End bp | 236826 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640828386 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001364423 |
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| Protein GI | 152998742 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.230411 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCAAAA
GTTTTGGATA TCCCTTATTT ATTGTCTATC CAGCTAGACT CTTTTAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG CGGTTTAGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAATTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT
GATGTGAAAG AGTGTCAGAT CCGTGGTGTT ACGTACTCAG CTCCACTACG CGTTAAATTA
CGCATGGTGT TGTATGACCG TGAAGCAGCG GCGGGCACAG TAAAAGATAT TAAAGAACAA
GAAGTCTACA TGGGTGATAT CCCATTGATG ACGGATAACG GTACTTTTGT TATCAACGGT
ACTGAGCGTG TAATCGTATC TCAATTACAT CGTTCTCCAG GCGTGTTCTT TGATCATGAC
CGTGGTAAAA CCCACTCATC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT
GGTTCATGGC TTGACTTTGA ATTCGATCCT AAAGATGCAC TATTTGTGCG TATTGACCGT
CGCCGCAAAT TGCCTGCGAC CATCATGTTA CGTGCATTAG AATATTCTAC TCAAGAGATC
CTCGATCTGT TCTTTGAACG CGTTGAGTTC AAGATCAAGA AAGATACTCT GGTTATGGCT
TTGGTTCCTG AGCGTCTGCG TGGCGAAACT GCCAGCTATG ACATCAAGGA TGCTGAAGGT
TCTGTATTGG TTGAAGCCGG TCGTCGTATC ACTGCGCGCC ACATTCGCCA ATTAGAAAAA
ACCAATACCA CTGAACTCGA AGTGCCAGTT GAATATATCG TGGGCAAATA TGCTGCTCAA
GATTATATCG ATCCGGACAC GGGTGAAGTT TTAGTCTCTG CCAACAGTGA AATTAGCCTA
GAAGATCTGG CTAAATTATC ATTGGCCGGT ATTAAAGAAC TCAGCACGTT GTATATCAAC
GAGCTAGATC ATGGTGCTTA TATTTCAGAT ACGCTGCGTA TCGATTCAAC CACTAACCGC
TTAGAAGCGC TGGTTGAGAT CTATCGTATG ATGCGTCCTG GCGAGCCACC AACCAAAGAT
GCTGCCGAAG CACTATTCCA GAACTTGTTC TTCAGTGAAG AGCGTTATGA CCTGTCTAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTC AGCATTCCTG ATGACGAAGG TAGCGGTGTA
TTGTCTAAAG AAGACATCGT CGCGGTAATG AAGAACATCA TTCATATCCG TAACGGTTTC
GACGAAGTCG ATGATATCGA TCACTTAGGC AACCGTCGTA TTCGTAGTGT CGGTGAAATG
GCTGAAAACC AATTCCGCGT AGGTTTAGTC CGTGTTGAGC GCGCCGTGCG TGAACGTCTA
TCTTTAGGCG ATCTGAACGA GCTGATGCCA CAAGACTTGA TCAACGCTAA GCCAATTTCT
GCTGCAGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCAC AATTCATGGA CCAAAACAAC
CCGCTGTCAG AAGTAACGCA TAAGCGTCGT ATTTCTGCTC TTGGCCCAGG TGGTTTGACT
CGTGAACGTG CAGGCTTCGA AGTCCGCGAC GTACATCCAA CGCATTATGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATCA ACTCATTAGC AAGTTTTGCC
CGTACTAACT CATACGGCTT CCTAGAAACG CCATACCGCA AGGTTATCGA CGGCGTGATT
ACTGACGAAG TGGAATACTT GTCAGCAATC GAAGAAGGTC GTTATGTGAT TGCACAGGCG
AACATTGAAA TTGATGCGAA CGGTCGTATG GCAGAAGAGC AAATTGCTTG TCGTCATAAA
GGTGAATCTA CCTTTATGCG CGCTGCTGAC ATCCAGTATA TGGACGTTTC GCCACAACAG
ATCATTTCTG TTGCTGCGTC GCTCATCCCG TTCTTAGAAC ACGATGATGC TAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAAGCC GTACCAACGC TGCGCTCTGA AAAGCCGCTA
GTAGGTACTG GTATTGAACG TACTCTCGCT GTTGACTCAG GTGTTGTGGT TGTTGCTAAG
CGTGGTGGTT TTGTAGACTA CGTTGATGCG AGCCGTATCG TTGTTAAGGT AAATGAAGAT
GAGCTACGCC CAGGCGAAGC CGGTATCGAC ATTTATAACC TGACTAAGTA CACCCGTTCT
AACCAAAACA CTTGTATCAA CCAACGTCCT TGTTGTTCAG TTGGTGAGCC AGTGGTTCGC
GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCCCT TGGCCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGATTCGAT CTTAATTTCT
GAGCGCGTAG CGCAAGAAGA CCGCTTCACT ACTATCCACA TTCAGGAGCT GTCTTGTATT
GCTCGTGATA CTAAGTTGGG TAGCGAAGAA ATCACGGCTG ATATTCCAAA CGTAGGTGAG
TCTGCTCTGT CGAAACTCGA CGAGTCAGGT ATCGTTTACA TTGGTGCAGA AGTGAAGGGC
GGCGATATTC TGGTTGGTAA AGTGACGCCA AAAGGCGAAA CACAGCTAAC GCCAGAAGAG
AAGTTATTGC GAGCTATCTT CGGTGAGAAA GCGTCTGACG TTAAAGACAG TTCACTGCGT
GTACCTAACT CTGTTAAGGG TACTATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAGAAAGACA AGCGTGCAGT TGAAATCGAA GAGATGCACA TTGCCCAAGC TCGTAAAGAT
TTAGGCGAAG AGTTCAAGAT CCTTGAAGAA GGTGTATTGA GCCGTGCGCG TAACCTGTTA
ATCGGTGCTG GTTTCACTGA CGCGCAAATT GCTGCCTTGC CACGTAAAGA TGTTTTGATT
CAAGTCATTG ACGATGAAAC TAAACAAACT GAACTTGAGC AATTAGCTGA ACAGCATGAA
GAGCTGAAAG CTGACTTCGA TAAGAAGTTT GAAATCAAAC GTCGCAAGAT CACCCAAGGT
GATGACTTGG CTCCAGGCGT ACTCAAGATC GTTAAGGTTT ACTTAGCGGT TAAGCGTACT
ATCCAACCTG GTGACAAGAT GGCGGGTCGT CACGGTAACA AGGGTGTTAT CTCTAAGATT
TGCCCAATCG AAGACATGCC GTATGACGAA CAAGGTAACC CAGTAGACAT CGTATTGAAC
CCACTAGGTG TTCCATCACG TATGAACATT GGTCAGGTAC TTGAAGTCCA TATGGGCGCC
GCTGCCAAAG GCATTGGTAA CAAGATCACT GCGATGCTTG AAGAACAGCG TGAGCTGGCT
GAAGTTCGTG GCTACATCAA ACAAGTTTAT GAATTAGGTG ACGAAGTGCA ACAGCGCGTC
GATATCGATT CATTCACTGA TGATGAAGTA TTACGTCTTG CGACTAACCT GAAAGGCGGT
ATCCCGATTG CAACTCCTGC ATTCGATGGT GCTAAAGAGA AAGAGATCAA GCAGATGCTT
GAACTTGCAG GTTTGCCAAC CTCTGGTCAG TTGAAGTTGT TTGATGGTCG TACCGGTAAC
GAATTTGAGC GTCAAGTAAC TGTTGGTTAC ATGTACATGC TCAAACTGAA CCACTTAGTT
GATGACAAGA TGCACGCCCG TTCTACCGGT TCGTACAGCT TAGTGACTCA ACAACCACTG
GGCGGTAAAG CTCAGTTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTGTG GGCACTAGAA
GCATACGGTG CCGCTTATAC GCTTCAAGAA ATGCTCACCG TTAAATCGGA TGACGTTAAC
GGTCGTACTC AGATGTATAA GAACATCGTC GACGGTAACC ATCAGATGCA ACCTGGCATG
CCAGAGTCCT TCAACGTGTT ACTGAAGGAG ATCCGTTCAC TCGGTATTAA TATCGAGTTG
GATCAGGCAT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPK VLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ
EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIML RALEYSTQEI LDLFFERVEF KIKKDTLVMA
LVPERLRGET ASYDIKDAEG SVLVEAGRRI TARHIRQLEK TNTTELEVPV EYIVGKYAAQ
DYIDPDTGEV LVSANSEISL EDLAKLSLAG IKELSTLYIN ELDHGAYISD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV
LSKEDIVAVM KNIIHIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVIDGVI
TDEVEYLSAI EEGRYVIAQA NIEIDANGRM AEEQIACRHK GESTFMRAAD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRSEKPL VGTGIERTLA VDSGVVVVAK
RGGFVDYVDA SRIVVKVNED ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHIAQARKD
LGEEFKILEE GVLSRARNLL IGAGFTDAQI AALPRKDVLI QVIDDETKQT ELEQLAEQHE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
CPIEDMPYDE QGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNKIT AMLEEQRELA
EVRGYIKQVY ELGDEVQQRV DIDSFTDDEV LRLATNLKGG IPIATPAFDG AKEKEIKQML
ELAGLPTSGQ LKLFDGRTGN EFERQVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DQA
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