| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0180 |
|---|
| Symbol | |
|---|
| ID | 5372973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 225065 |
|---|
| End bp | 226024 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640828373 |
|---|
| Product | biotin--protein ligase |
|---|
| Protein accession | YP_001364414 |
|---|
| Protein GI | 152998733 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
|---|
| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0210584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATA ATTGGGGAAG AAAGCGCCAG ATATTAGCGT TATTGTCTAG CGGTCAATTT
GTTTCAGGCG AGCAGTTAGC CACTGAACTT GGGATTTCGC GCGCCGCTGT AAATAAGCAC
ATTGATGCGT TAGAAACCTA TGGCGTAGCA ATTTATAGCG TTAAAGGTCG CGGCTATAAG
CTAGCCAATC CCATCTCTTT GATTGATGCT TCACGTTTAG TGCAGTCAAT TGATAACCGT
TGTTTTTATT TTGATGAGAT CGCAAGCACC AACGGCTTTA TGCTGAGCCA TACCACTGAG
CTAAAGAATG GCGATGTGTG TGTGGCAGAG TATCAATCTG CAGGTCGCGG TCGCCGAGGT
CGCACTTGGG TGTCGCCCTA TGGGCATCAC TTGTACTTCT CATTGTTTTG GACATTCCCG
CAGGGAATGG CACAGGCCAT GGGTCTAAGT TTAGTGGTGG CGTGCACTCT AGTTGAAGTG
CTTAAATCGT TTGGGGTCGA GAATATTGGG GTTAAGTGGC CGAATGATAT CTATTTGGAT
AACAAGAAGC TTGCCGGGAT CTTGATTGAA ATGTCGGGAC AGGCGGATAG TCAGTGTCAG
CTGATCATTG GTGTTGGCGT TAATATGGCG ATGTCAGAGG AGCAAGGCAA AGGTATCGAT
CAGCCTTGGA GTGACCTGTC AGATTTGGTC GATATGCCAG ATAAGACTGC GCTTGTTATC
GAATTACAGA GGCAACTGAA GCGCGATATC CAGCTATTTG AACGTGAAGG ATTAGCTGCA
TTCAAGGCTC GTTGGCAAGC GGCAGACTTA TTTTATGGTC GTGAAATACG TTTGCTTATG
GGGGAAAAGT CTGTCGAAGG GATTTGTCGC GGTGTTGATG AGCAGGGTGC GGTATTGCTC
GAAACCGCCG ACGGTGTGCA AGCATTTATC GGCGGTGAAA TTAGCTTAAG GGCACGCTAA
|
|---|
| Protein sequence | MSDNWGRKRQ ILALLSSGQF VSGEQLATEL GISRAAVNKH IDALETYGVA IYSVKGRGYK
LANPISLIDA SRLVQSIDNR CFYFDEIAST NGFMLSHTTE LKNGDVCVAE YQSAGRGRRG
RTWVSPYGHH LYFSLFWTFP QGMAQAMGLS LVVACTLVEV LKSFGVENIG VKWPNDIYLD
NKKLAGILIE MSGQADSQCQ LIIGVGVNMA MSEEQGKGID QPWSDLSDLV DMPDKTALVI
ELQRQLKRDI QLFEREGLAA FKARWQAADL FYGREIRLLM GEKSVEGICR GVDEQGAVLL
ETADGVQAFI GGEISLRAR
|
|---|
| |