| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0063 |
|---|
| Symbol | |
|---|
| ID | 5373578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 76572 |
|---|
| End bp | 78968 |
|---|
| Gene Length | 2397 bp |
|---|
| Protein Length | 798 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640828252 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001364299 |
|---|
| Protein GI | 152998618 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0128619 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAAA GCACATCACA GAAATTCTTG TTAAGTACAT TGGCCGTGTT GGTGAGTTCT
CACCTTTGGG CAGCCGAAGC ACCGCAACAG GAAGAAGCCA AGAAAGACGC GTTAGGTTTA
GAAAGAATTA CCGTGACTGG GGTTGCCCGC GGCACTCGTG TTATGGACTC GAGTGTGTCA
GTCAGCAGTG TGTCACTGGC TGAGCTTGAA GTGAGCTCAC CACGTTCATC GGCCGAGGCA
TTTCGTATTA TTCCGGGGAT GAAGGTCGAG TCTACTGGCG GTGAAGGTAA CGCTAACATT
GCCGTGCGTG GTTTACCTGT GGCGTCTGGT GGTGCTAAGT TCCTACAAAT TCAAGAAGAT
GGTTTGCCAA TCCTGCAGTT TGGCGATATC GCCTTCGGTA ACGCAGACAT CTTTTTACGC
TTAGATTCAA CAGTGCAAAC CATTGAATCT ATCCGTGGTG GCTCGGCATC GACTGCAGCC
AGTAATGCGC CCGGCGGCAT TATCAACGTG ATCAGTAAAA CGGGCACCTC GGATTCGGGC
AGTGTTGCTA CCACCTTAGG GCTGGATTAC GACACTTTCC GTACCGATTT TGAATATGGC
ACTAGCATCA ACGACAGCCT GCGTTTCCAT GTGGGCGGTT TTGTGCGCAC GGGCGAAGGC
CCACGCGACG CTGGCTATAA CGCCAACAAA GGCGGCCAGA TCAAAGCTAA CTTAACCAAA
GAATTCGATA AGGGTTATGT TCGTCTGTAT TTCAAACATT TAGACGATAA AAGCATTGGT
TACTTACCTA TGCCTATGTA CTCGGATGGC AGTTCAATCC CTGGTTTTGA TGCTAAATCC
GATGCGATTC AATCCGCGTA TTTCCAATCA ACCTTGAGCT TAGGTGCCGA TGGCGAACGT
CGCCGTGGCG ATATGCGCGA TGGCATGAAT CCTGTGGTTA ATTCTGTCGG CTTAGAAGCC
TCCTTCGATT TAGGTAACGA TTGGCAGGTA GAAAACCGTT TCCGTTTCTC CGATGTGAGC
GGTAACTTCA TCGCGCCATT CCCCGCCGAA GTGGCCAACG GTAGCGACAT CGCGACCAGT
ATTGCAGGCA CTGGCGCTAA GTTGATTTAC GCCAATGGAC CTAATGCGGG TAGTCAGATG
GACGGTTTAG CCATGCGTAT CAATACCTTT GATGTGCAGA TGAATGACTT TGGCTCAATC
GTAAACGACT TCAAATTGAC TAAAACCTTC GACGATACCA GCGTGACCTT AGGTTATTAC
AATGCGGTGC AAAACATCAG CATGACCTGG ATGTGGAACT CTTATCTGAT GGAAGTAAAA
GGCGATAATG CCGCGCTATT AGATGTGGTT GCCGCCGATG GTACTGCGTA TTCTGACAAT
GGCCTCTATG GTTATGGCGT ACCTTACTGG GGAAATTGTT GCCAACGTAA TTACGATACC
GACTACACCA TTAAAGCGCC TTACCTCGCG TTAGCCTCGA GTTTTGGTGA CTTATCGCTC
GATGCCAGTG TGCGTTATGA CAGTGGTGAT GCGAGCGGTA ACTACGCCGG TAGCGTCCAA
TCGCAAGTGG ATATGAATCT CGATGGGGTA ATTTCAATCC CTGAGCAGAG CGTGTCTTCC
ATCGATAATG CGAACCCTCA GCCAGTGAAC TACGATTGGA GCTACACCTC TTACTCATTA
GGTGCTAACT ATCAGTTTGC CAGTGACTTA GCTGCTTTTG CACGCTTGAG TCATGGTGGC
CGCGCCAATG CCGACCGTCT GTTATTTGGT AAGGTGCGTG CCGATGGTTC AGTGGCGAAG
GAAGATGCGG TTGATATCGT TGACCAGTAT GAATTAGGTG TTAAGTACCG TTACGATGAT
CTGTCTGTGT TTGCGACGGC GTTCTACTCA GAAACCGAAG AGCAAAACTT TGAAGCCACC
AGCCAACGTT TCTTCGACCG TAAGTACAAA GCCAAAGGTA TCGAAATCGA GTCTGCCTAT
TTTATCGGTG ACTTCGACTT TAGAGGCAAC CTAACCTGGA CCGATGCTGA GATTGCTAAA
GATGCATTAA CGCCAGAAGT GGTGGGTAAC ACCCCAAGAA GACAGGCTGA CTTCATCTAC
TCTTTGATGG GTCGTTACAA CTTTGACCAA GGTTCAGTGG GCGTTAACTT AATCGGTACC
ACGGATTCTT ATGCTCAAGA TAATAACGAC TTAAGTTTCG ACGGTTACAA CCAAGTGAAT
GCCTTTGCAA CTTACAATCT GACCGAAGCC ATGAGTGTGT CCTTAAACGT CAACAACTTG
TTTAATGCCA CGGGTATTAC TGAAGCGGAA GAAGGCTCAA TCCCTGATAA CAATATCATC
CGTGCCCGTA CCATTAATGG CCGCACCACG AGTGCGACGC TTAAATACGA GTTCTAA
|
|---|
| Protein sequence | MIKSTSQKFL LSTLAVLVSS HLWAAEAPQQ EEAKKDALGL ERITVTGVAR GTRVMDSSVS
VSSVSLAELE VSSPRSSAEA FRIIPGMKVE STGGEGNANI AVRGLPVASG GAKFLQIQED
GLPILQFGDI AFGNADIFLR LDSTVQTIES IRGGSASTAA SNAPGGIINV ISKTGTSDSG
SVATTLGLDY DTFRTDFEYG TSINDSLRFH VGGFVRTGEG PRDAGYNANK GGQIKANLTK
EFDKGYVRLY FKHLDDKSIG YLPMPMYSDG SSIPGFDAKS DAIQSAYFQS TLSLGADGER
RRGDMRDGMN PVVNSVGLEA SFDLGNDWQV ENRFRFSDVS GNFIAPFPAE VANGSDIATS
IAGTGAKLIY ANGPNAGSQM DGLAMRINTF DVQMNDFGSI VNDFKLTKTF DDTSVTLGYY
NAVQNISMTW MWNSYLMEVK GDNAALLDVV AADGTAYSDN GLYGYGVPYW GNCCQRNYDT
DYTIKAPYLA LASSFGDLSL DASVRYDSGD ASGNYAGSVQ SQVDMNLDGV ISIPEQSVSS
IDNANPQPVN YDWSYTSYSL GANYQFASDL AAFARLSHGG RANADRLLFG KVRADGSVAK
EDAVDIVDQY ELGVKYRYDD LSVFATAFYS ETEEQNFEAT SQRFFDRKYK AKGIEIESAY
FIGDFDFRGN LTWTDAEIAK DALTPEVVGN TPRRQADFIY SLMGRYNFDQ GSVGVNLIGT
TDSYAQDNND LSFDGYNQVN AFATYNLTEA MSVSLNVNNL FNATGITEAE EGSIPDNNII
RARTINGRTT SATLKYEF
|
|---|
| |