| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0059 |
|---|
| Symbol | |
|---|
| ID | 5371247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 70631 |
|---|
| End bp | 72094 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640828248 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001364295 |
|---|
| Protein GI | 152998614 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTAG AGCCTGCGTT ATCCCAGAGT GACCCTTTAC CGACTTCTGT TTTTCTCGCC
ATTTTCTCGG CCGTATTCTT GCCCATGTTT TTGGCGGCGG TCGATCAAAC CTTACTCGCA
ACGGCGACGC CAGCCATAGT TGAAGATCTT GGCGGCCTGC GCCAAGCCTC GTGGATCACT
ATCGGTTATA TGCTGGCAAT GGCGGCCAGC GTGCCGATTT ATGGCTGGTT AGGGGATAAC
TTCGGTCGCG CGAAAATCCT GATGATCGCC ATAGTGATTT TTGCGCTGGG CTCCATCGTT
TCGGCGAGTG CGGGCACTAT GGATCACATG ATCGCCGGAC GTATTTTGCA GGGCATGGGC
GGTGGCGGCT TGATGAGTTT GTCTCAATCT TTGATTGGTG AGTTAGTTCC CATTCGGCAG
CGGGCGCGTT TTCAAGGCTA TTTTGCTGCT ATGTTTACCC TCGCGAGTGT TGGCGGCCCT
GTCATTGGCG GTATTGTGGT GCACGCTTAT TCGTGGCATT GGCTATTTTG GGCGAATATT
CCACTGGCTA TGCTAGCGGT ATGGCGACTC AATGGCCTGC ATAAGCGCAG CGTTAAACCC
GTACGCCAAG GCAAGTTTGA TTTAGTGGGC GTGGTCTTGT TTCCGACCAT TATCACCGCA
CTGTTATATT GGTTATCTGT GGCGGGGCAA GAGTTTGCTT GGCTTTCTAC GACCAGCTTA
GGCTTTGCCG TCTTTGTGGT GTTCGGCATT CTAGGTCTGC TGTTGTGGGA ACGGCGATTG
GCGAGCCCGT TTCTGCCGTT AGATTTACTG GCGAAGAAGG CCGTGTATAT GCCACTACTA
ACGGCGGCGC TGTTTGCGGC CTGTTTGTTT GCGATGATCT TCTTCCTGCC GATTTATCTG
CAAGTGGGCT TACACACCAA TCCCGCCAAA ACCGGCTTGC TGCTCTTGCC TATGACCTTT
GGTATTGTCA CTGGCTCGAC GATTGCGGGC CGACTGTTAA GCAAAGATGT CGCGCCTAAG
TGGTTGCCGA CCTTTGGTAT GGGCTTAGCT TTCATCGGCT TGTTATTGAT TAGCTTTGTG
CCGCCCAATG CCAATGTTAT CGGCGGCTTA GGTGTGTTGG TCGGAATAGG ATTAGGCACT
GTGATGCCGA GTGTGCAGCT TGTGGTGCAG AGCGTGTCTG GCAAAGCGCG ACTCAGCCAG
ATCACGGCCA TGGTGTCACT GTGTCGTTCT ATGGGCGCTG CTATTGGTAC TGCGCTGTTT
AGCGTGCTGC TTTATAGTTT GTTGCCACTC ACGGGTTCAG AGCTTGGCAT CGCTGCGATT
AAAACATTGC CGACAGAGGT AGTGCATCAC GCCTTCCAAT ATGGATTTAT GGCCGCTGCG
GGTGTGGCAT TGTGCGCCGC GATAGTCGGT TTTCTATCCC CTGCGACGGC ATTAAAAGAT
CACGATAGCG AAACTGCGCA TTAA
|
|---|
| Protein sequence | MSLEPALSQS DPLPTSVFLA IFSAVFLPMF LAAVDQTLLA TATPAIVEDL GGLRQASWIT
IGYMLAMAAS VPIYGWLGDN FGRAKILMIA IVIFALGSIV SASAGTMDHM IAGRILQGMG
GGGLMSLSQS LIGELVPIRQ RARFQGYFAA MFTLASVGGP VIGGIVVHAY SWHWLFWANI
PLAMLAVWRL NGLHKRSVKP VRQGKFDLVG VVLFPTIITA LLYWLSVAGQ EFAWLSTTSL
GFAVFVVFGI LGLLLWERRL ASPFLPLDLL AKKAVYMPLL TAALFAACLF AMIFFLPIYL
QVGLHTNPAK TGLLLLPMTF GIVTGSTIAG RLLSKDVAPK WLPTFGMGLA FIGLLLISFV
PPNANVIGGL GVLVGIGLGT VMPSVQLVVQ SVSGKARLSQ ITAMVSLCRS MGAAIGTALF
SVLLYSLLPL TGSELGIAAI KTLPTEVVHH AFQYGFMAAA GVALCAAIVG FLSPATALKD
HDSETAH
|
|---|
| |