Gene Shew185_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_0056 
Symbol 
ID5370508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp67855 
End bp69099 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content49% 
IMG OID640828245 
Productmajor facilitator transporter 
Protein accessionYP_001364292 
Protein GI152998611 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00890] Oxalate/Formate Antiporter 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTAAAG AGATGAACCG TACTCGGTAC CTGACCTTAG TTGGTACTAT TATCACCCAG 
TTTGCACTCG GCTCAGTTTA CACTTGGAGC CTGTTCAATG CGCAGTTGGC CGCTAAGCTC
GACGAACCTG TCAGCCAAGT GGCGTTTGTA TTTGGTTTGC TGAGTTTGTC TTTGGCCGTG
GCTTCTTCCA TGGCGGGCAA ATTACAGGAA CGCTTCGGCG TGCGTAATGT CACCTTAGGC
GCAGGCCTAT TACTCGGGCT GGGATTCTTA CTCACTGCCC AAGCCAGTAA CTTGATGATG
CTTTATCTGT GTGCCGGGAT TTTAGTGGGC TTTGCCGATG GCACTGGCTA CTTAATGACT
TTATCTAACT GCGTGAAGTG GTTTCCCGAA CGCAAAGGGC TGATTTCGGC GTTAGCGATT
GGCGCCTATG GTTTAGGTAG CCTTGGATTT AAGTACATCA ACGTGCTGTT ACTCGAAAAT
ACTGGCCTTG AAACTACCTT CCAACTTTGG GGCTTAATCG CCATGGCGCT GGTGTTATGT
GGCGGCATGT TGATGAAAGA TGCGCCTGCA CAATCAGCCG CAAGTCAGCA AGCCGAAAGC
CGCGACTTCA CCCTCGCAGA AGCCATGCGT AAACCACAAT ACTGGATGCT GGCGCTGATG
TTCCTGTCTG CCTGTATGAG TGGTTTGTAT GTGATTGGTG TAGCGAAAGA TATCGGCGAG
AAGATGGTCG ACTTGCCAGT ACTGGTGGCT GCTAATGCGG TTGCGGTAAT TGCCATGGCG
AACCTCAGTG GTCGTTTGGT GCTGGGTATC CTGTCGGACA AAATTCCTCG CATTCGGGTT
ATTTCGCTGG CGCAGATCAT CACCTTAGTC GGTATGGTAT TACTACTGTT TGTACCTTTG
AATGCTAACC TGTTCTTCGT TGCCGTTGCC TGCGTTGCCT TTAGTTTTGG TGGCACTATT
ACTGTTTATC CCTCACTGGT GAGCGACTTC TTCGGCCTGA ATAACCTGAC TAAAAACTAT
GGGGTTATCT ACTTAGGTTT TGGTGTCGGC AGCATTATCG GTTCGATTGT CGCCTCGTTA
TTCGGTGGCT TTATTGCGAC CTTCAACGTG ATTTTAGTGC TGCTGGTGGT GGCGTTAGTG
ATGTCATTAA CCATACGTTT ACCAGAACCT AAAAACCCAG TGTCAGCCAA GAAAGCGACT
AAGAGTACAC CGCGCTTAGT GAACATGACG GCAGAATCGG CTTAA
 
Protein sequence
MTKEMNRTRY LTLVGTIITQ FALGSVYTWS LFNAQLAAKL DEPVSQVAFV FGLLSLSLAV 
ASSMAGKLQE RFGVRNVTLG AGLLLGLGFL LTAQASNLMM LYLCAGILVG FADGTGYLMT
LSNCVKWFPE RKGLISALAI GAYGLGSLGF KYINVLLLEN TGLETTFQLW GLIAMALVLC
GGMLMKDAPA QSAASQQAES RDFTLAEAMR KPQYWMLALM FLSACMSGLY VIGVAKDIGE
KMVDLPVLVA ANAVAVIAMA NLSGRLVLGI LSDKIPRIRV ISLAQIITLV GMVLLLFVPL
NANLFFVAVA CVAFSFGGTI TVYPSLVSDF FGLNNLTKNY GVIYLGFGVG SIIGSIVASL
FGGFIATFNV ILVLLVVALV MSLTIRLPEP KNPVSAKKAT KSTPRLVNMT AESA