| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0028 |
|---|
| Symbol | |
|---|
| ID | 5369520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 34339 |
|---|
| End bp | 35469 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640828213 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_001364264 |
|---|
| Protein GI | 152998583 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATAC CCATGAAACG GTTAATTTTA CTCGCGTTAA TGACATTCAA TTGCACGTTT
GTTGCCGCCG ATACCCTTAC GCTGAAAGCG GGGCATCCTG AGTCATATGT GGTGAAAAAG
GGCGATACTC TTTGGGATAT CTCCGCAGCG TTTCTAAATG ATCCATGGAA ATGGCCACGT
CTTTGGGATG TAAACCCACA GATTGCCAAT CCCCATCTTA TTTATCCTGG CGATCAACTC
ACACTCGTGT TTGTCGATGG TCAGCCTCGG CTTGTGCGCA ATGGCGACAT GGTCGACAGT
GCTAAACCCC ATGTGAAGAA AAGTCCTGAA GGACGGATCA TTGCCAAGAG CAATGCCATT
CCTGCCGTCG ACTTGGCTTT GATTGAACAG TATTTAGTGC AGAATCGCGT TGTCGCAACC
GACTGGCTTG CCGAGCAACC TATGGTATTA GCAGGTGAAA GCCCATCGCG TCACCATATT
GTGGGTGATG TGATTTATAT TGATGCTGAA CTGCCGATGA ATCAAAAGTA CGGTGTTTAC
GAACGTGGTC GCGAGTTTTT CAATAAAGCG TCAGGCGAAG CGATAGGACA AGAGGCCATT
TTAGCATCAA CTGGGCAAGT GGTTGAGTCT GGTAAGGTTT CAAAAATTAA GTTATTAACC
AGCTTTCGTG AAACCAAAGC GGGTTTCAGG GTCATGCCGA TGGAAAGTGA TTCTTTGATG
TCAGCTTACT TCACCCCAAA ACCGGCAGAG TTAAAGACAC CGGCCGTCGT GCTTGCTATC
GAATCAAAGA TGCGTGAAGC GGGTAAGTTG GATGTGGTGT ACTTAGATAA AGGCATCCAA
GATGGGGTTG AGCCCGGAGT TGTGTTCTCT ATTTACCGTG ATGGTGAAGT CATCGTCATC
AACAATGATG GTATGCCAGT GCCTGCCACT GAGCGCACCG CCTACGATAA CCTGATGGCA
TCTGTCTCAT CGGATCGCGC TATTCAAATG CCAGATATCT ATCATGGTAA ATTGTTGGTT
TTCAAAGTAT TCGACAAAGC GAGCTTAGGT TTGATTGTCT CCACCGAGCG GCCTGTGCGT
GTCGACGATA AGTTAATTGC CCCTGAGTCT TTAGCCTTAA GAGGTCAGTA A
|
|---|
| Protein sequence | MEIPMKRLIL LALMTFNCTF VAADTLTLKA GHPESYVVKK GDTLWDISAA FLNDPWKWPR
LWDVNPQIAN PHLIYPGDQL TLVFVDGQPR LVRNGDMVDS AKPHVKKSPE GRIIAKSNAI
PAVDLALIEQ YLVQNRVVAT DWLAEQPMVL AGESPSRHHI VGDVIYIDAE LPMNQKYGVY
ERGREFFNKA SGEAIGQEAI LASTGQVVES GKVSKIKLLT SFRETKAGFR VMPMESDSLM
SAYFTPKPAE LKTPAVVLAI ESKMREAGKL DVVYLDKGIQ DGVEPGVVFS IYRDGEVIVI
NNDGMPVPAT ERTAYDNLMA SVSSDRAIQM PDIYHGKLLV FKVFDKASLG LIVSTERPVR
VDDKLIAPES LALRGQ
|
|---|
| |