| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0027 |
|---|
| Symbol | def |
|---|
| ID | 5372483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 33701 |
|---|
| End bp | 34213 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640828212 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_001364263 |
|---|
| Protein GI | 152998582 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAT TAAAAGTATT ACAATTTCCT GACGAAAGAT TGCGGACACA AGCCACACCC
ATCACAGAGT TTAATGCCGA GTTGCAAACT CAAATTGATG ATATGTTCGA AACCATGTAC
CAAGAAAAAG GTATCGGTCT GGCCGCGACC CAAGTGGATT ACCATAAACA ACTTATTGTC
ATGGACTTAC AAGATGAAGT CGAGCGACCT AAAGTGTTTA TCAATCCCGA AATTATCGCC
AGCAGCGGCG ACTTCTGCAA TGAAGAAGGT TGCCTGTCGG TGCCGGGCAT TTATGCCAAA
GTCGATCGCG CCGAATTTGT TACGGTAAAA GCCTTAGACA GGCACGGCAA CGAATTTATT
GTTGAGGCCG ATGAGCTTTT TGCTATCTGT ATTCAACACG AAATGGATCA CCTCAAAGGC
AAATTGTTTG TCGATTATCT GTCGCCGCTA AAACGTCAGC GGATCAAACA AAAACTTGAA
AAAGCGGCCC GATTGGACGC CAAAGAAGCA TAG
|
|---|
| Protein sequence | MAQLKVLQFP DERLRTQATP ITEFNAELQT QIDDMFETMY QEKGIGLAAT QVDYHKQLIV
MDLQDEVERP KVFINPEIIA SSGDFCNEEG CLSVPGIYAK VDRAEFVTVK ALDRHGNEFI
VEADELFAIC IQHEMDHLKG KLFVDYLSPL KRQRIKQKLE KAARLDAKEA
|
|---|
| |