Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Krad_3436 |
Symbol | |
ID | 5335073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kineococcus radiotolerans SRS30216 |
Kingdom | Bacteria |
Replicon accession | NC_009664 |
Strand | - |
Start bp | 3534655 |
End bp | 3536907 |
Gene Length | 2253 bp |
Protein Length | 750 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | |
Product | glycoside hydrolase family 3 domain protein |
Protein accession | YP_001363163 |
Protein GI | 152967379 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0398792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00586208 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGACCGACA CCGCCGTCCC CACCCCGCAG GCGCTGCTCG CGCAGCTGAC CCTGGAGGAG AAGGCCGCCC TGCTGGACGG TTCGGACTTC TGGCACACCG AACCCGTCGA GCGCCTGGGG ATCCCGGCGC TCATGGTCAC CGACGGCCCG CACGGGCTGC GCAAGCAGAC CGAGGGCGGC GACCACCTCG GCCTCGACGC CAGCGTCCCC GCCACCTGCT TCCCCCCGGC CGCCGGCCTG GCGTCCTCGT GGGACGTCGA CCTGCTGCGC CGCGTCGGGG AGGCCCTGGG CCGCGAGACC CGCGCCGAGG GGGTTTCGGT CCTGCTGGGC CCGGGGGTGA ACATGAAGCG CTCCCCGCTG TGCGGGCGGA ACTTCGAGTA CTTCTCCGAG GACCCGCTGC TCGCCGGCGA CCTCGCGGCC GCGGTGGTCC AGGGGATCCA GAGCCAGGGC GTGGGCACGT CGCTGAAGCA CTTCGCGGCC AACAACCAGG AGACGCAGCG GATGACGGTC TCCGCCGACG TCGACGAGCG CACGCTGCGG GAGATCTACC TCACCGCCTT CGAGCGGGTC GTGCGGACGG CGCAGCCGTG GACGGTCATG TGCTCCTACA ACCGGATCAA CGGCGTCTAC GCCTCGCAGG ACCCGTGGCT GCTGACGACG GTCCTGCGCG AGGAGTGGGG TTTCGAGGGC CTCGTCGTCT CCGACTGGGG CGCGGTCGAC GTCCGCGAGG ACGGCGTCCG CGCCGGTCTC GACCTGGAGA TGCCGTCGTC CTCGGGCGCG GGAACCCGGC GCGTCCTCGA CGCCGTCGCC GCCGGGACCC TGTCGGTGGA TGACGTGGAC CGGTGCGCCC TGCGCGTGCT GGAACTGGTG GGGAAGTCCC GGCCCGCGCT GGCCGAACCG GGTTCCTTCG ACGCCGCGGC CCACCACGCC CTCGCCCGCG AGGCCGCGAT CCAGAGCGCG GTCCTGCTGA AGAACGACGG GAACGCGCTG CCCCTGGCGG CGACCGGCGG CCCGGTCGCC GTCGTCGGCG AGTTCGCCCG CACCCCCCGC TACCAGGGAG CGGGCAGTTC CCAGGTGAAC CCGACCCGGC TCGACGACGC GCTCGGCGCC CTGCGGGAGC GGTTCGCCGG TGCCCGCGAG GTCACCTTCG CCGCCGGTTT CGTCCCCGAG GACGAGGAGG TCCAGCCGGG ACTGGTCGCC GAGGCCGTCG CCCACGCCGC CGCCGCCGAG GTCGTCGTGC TGTTCCTGGG CCTGCCCGCC GCCTACGAGT CCGAGGGCTA CGACCGGGAG CACACCAACC TGCCGCCCGC GCAGCTCGAC CTCCTCGACC GGGTCGTCGC GGCGAACCCG AACACCGTCG TCGTCCTCGC CAACGGGTCC GTCGTGAACC TCGAACCGTG GTGGGACGCG GTCCCCGCGG TGCTGGAGGG CTGGCTCGGC GGGCAGGCCG GGGGCCTCGC CGTCGCGGAC CTGCTGTCCG GGGCCGCGAA CCCCTCGGGC AGGCTCGCCG AGACGATCCC GCTGCACTAC CGCGACAACC CCACCGTGGG GAACTTCCCC GGCGAGCACG GCCACGTCCG CTACGGCGAG GGCCTGCTCA TCGGCTACCG CTGGTACGAC GCGCGGTCCC TGCCCGTCGC CGCCGCGTTC GGCCACGGCC TGTCCTACAC GACGTTCGAC TACTCCGGCC TGGAACTGGT CGCCGGGGAC ACCGGCCTCG ACGTGCACGT CACGGTCCGC AACTCCGGCG CCGTGGCCGG TTCCGAGGTC GTCCAGGTCT ACGTCGCCGA CACCGAGTCG ACGGTGTTCC GCCCCGAGCA GGAGCTCAAG GGCTTCGCCC GGGTCACCCT GGAACCCGGC GAGAGCCGTG AGGTCGTCGT CACCCTCGAC CAGCGCGCGT TCGCCTTCTG GCACGACGTG GCGCGCCGCT GGGTCGTGGA GGGCGGCGAG TTCGGGATCC GCGTCGGTTC CTCCTCCCGC GACATCCGCC TCGCGCGCAC GGTCGAGCTG CCCGGCGACG AGGTCGGCCT CCCCCTCGCC GTGGACTCCG AGGCGGAGCA GTGGCTCGCG CACCCCGTCG TGGGGGGCCG CGTCCGCGAC GCGCTGCGGG GGACCCCGTG GATGGAGATG CTCTTCGACC CGCGCAACGG GCAGATGATG CGGGCCATCC CGCTGCAGCG CCTCACCCGT TTCCCCGGGT TCCCCCTCCC CGAGGAGGAC CTGGCGCAGC TCGTCACGGA CGCGAACGCG TGA
|
Protein sequence | MTDTAVPTPQ ALLAQLTLEE KAALLDGSDF WHTEPVERLG IPALMVTDGP HGLRKQTEGG DHLGLDASVP ATCFPPAAGL ASSWDVDLLR RVGEALGRET RAEGVSVLLG PGVNMKRSPL CGRNFEYFSE DPLLAGDLAA AVVQGIQSQG VGTSLKHFAA NNQETQRMTV SADVDERTLR EIYLTAFERV VRTAQPWTVM CSYNRINGVY ASQDPWLLTT VLREEWGFEG LVVSDWGAVD VREDGVRAGL DLEMPSSSGA GTRRVLDAVA AGTLSVDDVD RCALRVLELV GKSRPALAEP GSFDAAAHHA LAREAAIQSA VLLKNDGNAL PLAATGGPVA VVGEFARTPR YQGAGSSQVN PTRLDDALGA LRERFAGARE VTFAAGFVPE DEEVQPGLVA EAVAHAAAAE VVVLFLGLPA AYESEGYDRE HTNLPPAQLD LLDRVVAANP NTVVVLANGS VVNLEPWWDA VPAVLEGWLG GQAGGLAVAD LLSGAANPSG RLAETIPLHY RDNPTVGNFP GEHGHVRYGE GLLIGYRWYD ARSLPVAAAF GHGLSYTTFD YSGLELVAGD TGLDVHVTVR NSGAVAGSEV VQVYVADTES TVFRPEQELK GFARVTLEPG ESREVVVTLD QRAFAFWHDV ARRWVVEGGE FGIRVGSSSR DIRLARTVEL PGDEVGLPLA VDSEAEQWLA HPVVGGRVRD ALRGTPWMEM LFDPRNGQMM RAIPLQRLTR FPGFPLPEED LAQLVTDANA
|
| |