Gene Krad_3187 details

Gene Information

• Locus tag: Krad_3187
• Symbol: dnaE
• ID: 5334990
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Kineococcus radiotolerans SRS30216
• Kingdom: Bacteria
• Replicon accession: NC_009664
• Strand: +
• Start bp: 3805362
• End bp: 3808904
• Gene Length: 3543 bp
• Protein Length: 1180 aa
• Translation table: 11
• GC content: 68%
• Product: DNA polymerase III subunit alpha
• Protein accession: YP_001362915
• Protein GI: 152967131

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.527295
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCATCCG CGGACTCGTT CGCCCACCTG CACGTCCACA CCGAGTACTC CATGCTGGAC 
GGTGCGGCCA AGGTGGACGA CCTCTTCCGC ACCGCCGCGG AGATGGGGAT GCCGGCGGTC 
GCCACCACCG ACCACGGCTT CGTCTTCGGC GCCTACGACT TCTGGAAGAC GGCCAAGAAG 
CACGGCGTGA AGCCGATCAT CGGCGTCGAG GCCTACCTGA CCCCGGGCAC GGCCCGCCAG 
GACAAGACCC GCGTGAAGTG GGGCGACCCC AACGGCCGCT CCGGCGACGA CGTGTCGGGC 
GCGGGGTCCT ACACCCACAT GACGATGCTG GCCCAGAACA CCGCCGGCAT GCACAACCTC 
TTCAAGATGA GCAGCCTCGC CAGCCTCGAG GGCTTCCTCT ACAAGCCCCG CATGGACCGC 
GAGCTGCTCT CGCAGTACTC CGCCGGCCTC ATCGCCACCA CGGGCTGCCC CTCGGGGGAG 
GTCCAGACGC GGCTGCGGCT GGGCCAGTAC GACGAGGCCC GCAAGGCCGC CGCGGACTAC 
CGCGACATCT TCGGGGCGGA GAACTTCTTC TGCGAGCTGA TGGACCACGG CCTCGACATC 
GAGCGCCGCG TCCAGGACGA CCTGCTCAAG CTGGCCAAGG ACCTCGACCT GCCGCTGCTG 
GCCACCAACG ACCTGCACTA CACCCACGCG GGGGACTCCC AGGCGCACGC GGCGCTGCTG 
TGCGTGCAGT CCGGTTCGAC GCTGGCCGAC CCCAAGCGCT TCAAGTTCGA CGCCGACGAG 
TTCTACCTCA AGAGCCCCGC CGAGATGCGC CACGTGTGGC GCGACCACCC CGAGGCCTGC 
GACAACACCC TGCTCATCGC CGAGCGGTGC GAGGTCGAGT TCACCGAGTC CACCGGCGCC 
TACATGCCGC GCTTCCCCTG CCCGGAGGGG GAGGACGAGG AGAGCTGGTT CGTCAAGGAG 
GTCTGGAGCG GGCTGGCCCA GCGCTACCCG GCGGGCATCC CCGACGACGT GCGCAAGCAG 
GCCGACTACG AGATCGAGGT CATCACCTCC AAGGGCTACG CCGGGTACTT CCTCGTCGTC 
GCCGACTTCA TCAACTGGTC CAAGGAGAAC GGCATCCGGG TCGGACCGGG CCGTGGTTCC 
GGCGCGGGGT CGATGGCCGC CTACGCCATG AAGATCACCG ACCTGGACCC GTTGCGCCAC 
GGCCTGTTCT TCGAGCGCTT CCTCAACCCC GAGCGCATGT CCATGCCCGA CTTCGACGTC 
GACTTCGACG AACGCCGCCG CGGTGAGGTC ATCCAGTACG TCGTCGAGAA GTACGGCACC 
GACCGCGTCG CGCAGATCGT CACCTACGGC ACGATCAAGG CGAAGCAGGC GGTCAAGGAC 
TCCTCGCGCG TCCTGGGTTT CCCGTTCTCC ATGGGCGACC GCATCACGAA GACGATGCCG 
CCGGCCGTCA TGGGCAAGGA CATCCCGCTG TCGGGGATCT TCGACCCGAA CCACAAGCGG 
TACTCCGAGG CGGGGGAGTT CCGCGAGCTC TACAAGTCCG ACCCCGAGGT CGTGAAGGTC 
GTCGACACCG CCCGCGGTCT CGAGGGGCTG AAGCGGCAGT GGGGCGTGCA CGCCGCGGGC 
GTCATCATGT CGTCCGACCC GCTGATCGAC CTCATCCCGA TCATGAAGCG GGAAGCCGAC 
GGCGCGATCA TCACCCAGTT CGACTACCCG ACGTGCGAGA CGCTCGGGCT GGTCAAGATG 
GACTTCCTGG GGCTGCGCAA CCTCACGATC CTCGACGACG CCCTGAAGAA CGTCGTGGCC 
AACGGCAAGG AGGCCGTCGA CCTCGACGCC CTCGAGCTCG ACGACCAGGC CACGTTCGAC 
CTCCTCGGCC GCGGGGACAC CCTCGGGGTG TTCCAGTTCG ACGGCGGGCC CATGCGCTCG 
CTGCTGCGGC TCATGCGCCC GGACAACTTC GAGGACATCT CCGCCGTCGG TGCCCTCTAC 
CGCCCGGGGC CGATGGGCGC GGGTTCGCAC ACCGCCTACG CCCGGCGCAA GAACGGCCAG 
GAGCCGATCA CCCCGATCCA CCCCGAGCTC GAGGAACCCC TGAAGGAGAT CCTCGGCACG 
ACCTACGGCC TGATCGTGTA CCAGGAGCAG GTCATGTCGA TCGCGCAGAA GGTCGCCGGG 
TACTCCCTCG GCAGCGCCGA CCTGCTGCGC CGGGCCATGG GCAAGAAGAA GCGCGAGGTC 
CTCGACGCCG AGTACGTGGG CTTCGAGAAG GGGATGCTGG ACAACGGGTT CTCCAAGGAG 
TGCGTCAAGG CGCTCTGGGA CATCCTCGTC CCCTTCTCCG ACTACGCCTT CAACAAGGCC 
CACTCCGCGG CCTACGGGCT GGTCTCCTAC TGGACGGCCT ACCTCAAGGC GAACTACCCG 
GCGGAGTACA TGGCCGCGGT GCTCACCTCG GTGCGCGACG ACAAGGACAA GTCCGCGCTG 
TACCTCAACG AGTGCCGCCG CATGGGCATC CAGGTGCTCC CGCCGGACGT CAACGAGTCC 
AGCGCGAACT TCACCGCCGT GGGCGCCGAC ATCCGCTTCG GCCTCACCGC GATCCGCAAC 
GTCGGCGCCA ACGTCGTCGA CGCGGTCGTG GAGGCCCGGG CGGAGAAGGG CCGTTACGAG 
TCGTTCACCG ACTTCCTCAC CAAGGTCCCC GCGGTCGTCT GCAACAAGCG CACCATCGAG 
TCGCTCATCA AGGCCGGCGC CTTCGACTCC CTGGGGCACC GCCGCCGCGC GCTGGTGGCC 
AAGCACGAGG ACGCCGTGGA CGCCGTCGTG GACGTCAAGC GCAACGAGGC CATCGGGCAG 
TTCGACCTGT TCGCCGGTCT CGGCGGGGAC GACGACGGCG GGGCGGGGGG CTTCCACGTC 
GAGATCCCGG ACCTGCCCGA GTGGGAGAAG GCCGAGCTGC TGGCCCACGA GCGGCAGATG 
CTCGGCCTCT ACGTCTCCGA CCACCCGCTG TTCGGGTTGG AGCGGCTGTT GGCCAACGCC 
TCCGACGTGC CGATCGCGAC GCTGCTGGAG GACGAGTCCC GTCCCGACGG CTCGAACATC 
ACCATCGCGG GGATGATCAC CGGGCTGCAG CGCAAGACGA CCAAGCAGGG CAACTACTGG 
GCGATCGTCA CCGTCGAGGA CCTCGCGGGG GCCATCGAGT GCCTGTTCTT CCCCCAGGCC 
TACGCCGACG TGGCGCAGCT GCTGGCCGAG GACCTCGTCG TCGTCGTCAA GGGCCGGCTC 
AACCGGCGCG ACGAGGTGCC GACGATCTAC GCCTCCGGCC TCACCGTGCC GGACATCTCC 
AGCACCGACG GGGTGCCCGT CACGGTCACG CTGCCGACGG CGCGCTGCAC GACGCAGGTC 
GTGGAGAAGC TGAAGTCCGT CCTCGAGACC CACGCCGGCT CCACCGAGGT CCGGCTGCGG 
CTGACGAGGA ACGGCGGCGG CAGCGGGACG CTGATGCGCC TGGACGACTC GCTGCGCGTC 
ACCCCCAGCC CGGCCCTGTT CGGCGACCTG AAGCAGCTGC TCGGCCCCGC GTGCCTGGTG 
TGA 

 

Protein sequence

MASADSFAHL HVHTEYSMLD GAAKVDDLFR TAAEMGMPAV ATTDHGFVFG AYDFWKTAKK 
HGVKPIIGVE AYLTPGTARQ DKTRVKWGDP NGRSGDDVSG AGSYTHMTML AQNTAGMHNL 
FKMSSLASLE GFLYKPRMDR ELLSQYSAGL IATTGCPSGE VQTRLRLGQY DEARKAAADY 
RDIFGAENFF CELMDHGLDI ERRVQDDLLK LAKDLDLPLL ATNDLHYTHA GDSQAHAALL 
CVQSGSTLAD PKRFKFDADE FYLKSPAEMR HVWRDHPEAC DNTLLIAERC EVEFTESTGA 
YMPRFPCPEG EDEESWFVKE VWSGLAQRYP AGIPDDVRKQ ADYEIEVITS KGYAGYFLVV 
ADFINWSKEN GIRVGPGRGS GAGSMAAYAM KITDLDPLRH GLFFERFLNP ERMSMPDFDV 
DFDERRRGEV IQYVVEKYGT DRVAQIVTYG TIKAKQAVKD SSRVLGFPFS MGDRITKTMP 
PAVMGKDIPL SGIFDPNHKR YSEAGEFREL YKSDPEVVKV VDTARGLEGL KRQWGVHAAG 
VIMSSDPLID LIPIMKREAD GAIITQFDYP TCETLGLVKM DFLGLRNLTI LDDALKNVVA 
NGKEAVDLDA LELDDQATFD LLGRGDTLGV FQFDGGPMRS LLRLMRPDNF EDISAVGALY 
RPGPMGAGSH TAYARRKNGQ EPITPIHPEL EEPLKEILGT TYGLIVYQEQ VMSIAQKVAG 
YSLGSADLLR RAMGKKKREV LDAEYVGFEK GMLDNGFSKE CVKALWDILV PFSDYAFNKA 
HSAAYGLVSY WTAYLKANYP AEYMAAVLTS VRDDKDKSAL YLNECRRMGI QVLPPDVNES 
SANFTAVGAD IRFGLTAIRN VGANVVDAVV EARAEKGRYE SFTDFLTKVP AVVCNKRTIE 
SLIKAGAFDS LGHRRRALVA KHEDAVDAVV DVKRNEAIGQ FDLFAGLGGD DDGGAGGFHV 
EIPDLPEWEK AELLAHERQM LGLYVSDHPL FGLERLLANA SDVPIATLLE DESRPDGSNI 
TIAGMITGLQ RKTTKQGNYW AIVTVEDLAG AIECLFFPQA YADVAQLLAE DLVVVVKGRL 
NRRDEVPTIY ASGLTVPDIS STDGVPVTVT LPTARCTTQV VEKLKSVLET HAGSTEVRLR 
LTRNGGGSGT LMRLDDSLRV TPSPALFGDL KQLLGPACLV