Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Krad_1006 |
Symbol | |
ID | 5334417 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kineococcus radiotolerans SRS30216 |
Kingdom | Bacteria |
Replicon accession | NC_009664 |
Strand | + |
Start bp | 1270758 |
End bp | 1272563 |
Gene Length | 1806 bp |
Protein Length | 601 aa |
Translation table | 11 |
GC content | 80% |
IMG OID | |
Product | diguanylate phosphodiesterase |
Protein accession | YP_001360758 |
Protein GI | 152964974 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.155434 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00194225 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGTCGGACG ATCGCGCCGG GCCCGCCGAC CGGTCCTCAC CCTCCGTGAC GACTCACCCG TTCGGGCTCA AGTCCGCGAC CCGACGTGCC GACGTCGTCC CGGTGACCCC CCTGCGCACC GACCCCGCGA CGGCCGCTCC CGTCGACCTG GACCGCGTGC TGGGCGAGGA CGCGCTGCGC ACGGTCTTCC AGCTCGTCGT CGACCTGGAC TCCCGGCGCC CGGTGGCCGT CGAGGCCCTG GTCCGGGGCC CGCGCGGCTC CGGCCTGGCC ACCCCCGGGC AGCTCTTCGA CGCGGCCGCG CGCACCGGCC GGCTCGCGGA GCTCGACCGC GCCTGCCTGC GGACGGCGCT GCGCGCGGCG ACCGGCGCGG GGCTGGCCGC GCCCTGGACG CTGTTCCTCA ACGGCTCCCC CGACCAGGAG CTCCCCGCGG AGCTCACCGC CGGGGTCGCC GGCGCCCGGC CCGTCGTGGT CGACCTCACC GAGCGCGCGC TCACCACCCG CCCCGGGCAG GTCCTGCGCG CCGCGGCCGG GCTGCGCGCC CGCGGCCTCG GCGTGGCCCT CGACGACCTC GGCGCCGACC CCGCCGCCCT GGCCCTGCTG CCCCTGCTGC GGCCCGACGT CGTCAAGCTC GACCTGCGCC TGCTGGCCGC GCGCCCCGAG GCCGAGGTCG CCGCGATCGT CCAGGCCGTG TCCGCGCAGG CCGAGCGGGA CGGGACGACC GTCCTGGCCG AGGGCGTCGA GACCGAGGAG CACCTGCGCA CCGCCCGGGC CCTGGGCGCC ACGCTGGGCC AGGGGTGGCT CTTCGGACGC CCGGCCGCGC TGGGCGACCT CCTGGCCCGC ACCCCCGTCC CCGCGCACCC GCTGCCCGTG CTGCCCCCCG CCGGTCCCGG CGGGGACGGC CCCACCCCCT TCGCGGCGCT GGAACGGCGC CGGCCCGCGC GCCGGGCGGG GACCGACGTG GTCGAGGAGG CGCTGCGCCA CCTGGAGCGG CACGCGCTGC GCGGCGTCGA GCCGTCGACC GTCGTCGGCG TGGGCGCCAC CTCCCCCGAG CGGGCCGCGC GGCACGAGCA GCTCGCCCGC CGCGCCGGGT TCGCGCTGAG CCTGCCCGGC GCCGACGGGC GCGGCGAGGA CGTGCGCGGC ACCGTCGTCC TGGGGCCGCA CTTCGCCGGG GCCGTCCTGG CCCGCCCCGT CGCCGGCACC GGGGAGTTCG ACCTCGTCGT CTCCCACGAC CGCGCCCTCG TCACCGCGCT GGTCACCGAC CTCGTCCGGG ACGCGCCGGA CCACGTTCCC GTCCCCGTCA CCGCCCCCGT CACCGCCCCC GTCCTCGCCC ACCGGCCCGC GGTCGAGGCC GGACCGCCGG CGGCGGGACT CGGCGAGCAG GTGGGCGAGG CCCTGGAGGA GGGCCGCCGG GCCGGCACCG GGACCGGGCT GCTGGTCGTC GGCGTCGACG CCGCCGTCGG GACCGAGGGG CGGTGCGGGC CCGCGCGCGC GGAGGTCGTC CGCCGGATGC GCCGGGCGGT GCGCTCGGTG GACCGGTGGC TGCCGGTGGG GCCGGACCTG TTCGCCGTCC TGCTGACCGG GCTGCCCCGC TCCGGCAGCG AGGGGGTCGT GGAACGCGTC GCCGACGCCC TGCTGATGGC GGTGGAGACC TCGATGGACT CCCACCCCGA CGTCTCGGTG AGCATCGGGG CGAGCCTGGC CCCGACCCGC GCCCACACCG GGGCGGAGGC GCAGCGGCAG GCGCTGGCCG CGCTCGACGC GGCGCGCCGC GCGGGTGGGC ACTGCGCGCG GATCTGGCTG GTCTGA
|
Protein sequence | MSDDRAGPAD RSSPSVTTHP FGLKSATRRA DVVPVTPLRT DPATAAPVDL DRVLGEDALR TVFQLVVDLD SRRPVAVEAL VRGPRGSGLA TPGQLFDAAA RTGRLAELDR ACLRTALRAA TGAGLAAPWT LFLNGSPDQE LPAELTAGVA GARPVVVDLT ERALTTRPGQ VLRAAAGLRA RGLGVALDDL GADPAALALL PLLRPDVVKL DLRLLAARPE AEVAAIVQAV SAQAERDGTT VLAEGVETEE HLRTARALGA TLGQGWLFGR PAALGDLLAR TPVPAHPLPV LPPAGPGGDG PTPFAALERR RPARRAGTDV VEEALRHLER HALRGVEPST VVGVGATSPE RAARHEQLAR RAGFALSLPG ADGRGEDVRG TVVLGPHFAG AVLARPVAGT GEFDLVVSHD RALVTALVTD LVRDAPDHVP VPVTAPVTAP VLAHRPAVEA GPPAAGLGEQ VGEALEEGRR AGTGTGLLVV GVDAAVGTEG RCGPARAEVV RRMRRAVRSV DRWLPVGPDL FAVLLTGLPR SGSEGVVERV ADALLMAVET SMDSHPDVSV SIGASLAPTR AHTGAEAQRQ ALAALDAARR AGGHCARIWL V
|
| |