| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4442 |
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| Symbol | |
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| ID | 5369282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009661 |
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| Strand | - |
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| Start bp | 61627 |
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| End bp | 64215 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640819238 |
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| Product | Type-IV secretion system protein TraC |
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| Protein accession | YP_001355460 |
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| Protein GI | 152998539 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 49 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAC GTATTAAAAA CGATCTCGGC GCACTCTATG CCAGCAGCAA ACAGCAGCAC
AACCATCTGC ATCATGAATT GCCCTATCGC ATTTATGATG ATGCTGAACA AGTCTTTGAA
AATGCTAATT CGCTTGGTTT TGGCTTTGCC ATTTCGCTGT TTGGCGGGGC GAATGACGAC
TTGATCAAAA CCATGAACGC CTTGGTGTGC ACACTGCCAG AGGGCGACAA ATGGCACTAT
CAATTCGTCA TGGTGGGTAA CAACCAAGTC GGTGAACTCA TCGAGCAAAA TCAAGCGCTG
CTTAAGGGCC GCAATGCCAT TTGCGATAAA TTTGCTAATA ATGAAGCTAT CTATGCCAAA
CACAGTTCGA CCAAAGGCTT TGGCACCAAG CTCAGCAGCG CATACCACTA CGATTTAAAG
AACACCAAAG GGTTTTTCTT TGTTTCAACC ACCGAGGACA TGCCTGCACT GCTGGATATG
CGTCTTGGCG TTGAGTCAGA ACTGGCGCAA ACAGGCATGC ACATTCGCCG CTTAGGCGCT
GACGATCTGA TTGAGCATTG CCGCGAACAC TTAAATTTTT CGCATCAACA AGATCGCGTC
ACGCCCGCTA AATATAACGA GTATCAACCT CTCAACACCC AAATTCTCAG CCCTGACAGT
GAGTTCATCA TTAATCGTGA TTCGGTCAAT ATCCGTCACA CACCGATGCA ATCAGACAAC
AGTGTCGATA CCACCCTAAT CAATCTAGGG CTTAAAGGGC TGCCGAACGA TTTTAGGCTG
TATGCGTTTC CCAACTGCAT TGCATCACTC AGTTACACCA TGAACAGTGT TCAATGCCCT
TACCGTGTCA GCGTGTCGTT TTATATTAAT AAAACGGGTG AGCAAACAAC CCGTAACGAC
AGCAAAATTG GCTCACTAAC GAAAACGGTC AACTCCCCTA TGCGGTTGTT GATCCCCAGT
GCTGCGGATG AACTGGCTGA ACGCAAGGAG ATACAAAAAG GACTCAGCTC ACACGCCTTT
AAAATCACCA CCATGACATT GAATGTCACC CTGTATACGA CAGAAGAGAA GCACCGCCAC
GACACCTCAA AGGCGATAGC GACATTTCGC ACGGCAGGCA TTGATTTAAT CCGAAACAAT
AAACTGCAAG GCATGTGTAC TCTGTCCACA CTCCCGTTCT CAATGAGCGA AGGCTTTATG
AAAGACAGCC AAAAAGCGGG CCTGTGTTTC ATGATGAAAA CCTCAAACTT GGTGAACTTT
TTACCGATTG TTGCAGACTA CAAACGCTTA TCCGCAGGGT TACTCTTGCC AACAATGCGC
CATCAAATTA GCTATTTCGA TCCGTTTAAC TGCGGCAGTG ATAACTACAA CATGGCCATC
ACGGGCGGCT CAGGGGCAGG GAAGTCATTC TTCATGCAAG CCTTGGTGAA ATCTATTTTT
GCCAAAGGGG GCAAGGCATG GATTTTAGAC AAAGGCCAAA GCTATAAAAA ACTCACTCAA
ACATTAGGCG GCGTCTATCT CGATAGTTCG CAGATTTTCC TAAACCCGTT TACCCACTTA
GGCAAAGTAT TAAGCGTGCG GGATGCGGGC ACTTTTGGCC CAATCCTCGA TGATGAAGGT
CAAGCCATTG ATCCCATCAC CGAAGTGTTG GGAAACATCA CCGCGCTTAT CGCCACCATG
GCATCTCCTG ATGAAAAGCT CACCGGATTT CAGACGGCAT TACTCGGCGA TGCTATTTTG
CTGGCATGGC AAAAATGCGG TAACGACACG CTGATTGACG ATGTGCAAAA GGCACTCTAT
GACATTGCCG CGCAAAAAAA TGACGATACC CGTATCAGTG ATATCGCTGC GCAATTAAAC
AAGTTCTGTT CAAGCGGTAT TCATGGCGCG ATTTTCAATA AGCCCTCGAT GCTCGATCCC
AATATCGATA TCACCACTCT TGAACTCGAT GGATTTAAAG GCGAGCTGCA ACGTCCGGTG
ATTTTCGCGT TAATGGTGAC GATTAGCCAA CAAATGTACT TATCGGGCCA ACGTTCTATT
CCGAAAATCT GTGTGATTGA AGAAGCGTGG TCGCTCATGA GCGGCGCGAA TGCGCAAAGT
AAGGATTTCA TCAACGAAGG TTATCGCACA GTGCGTAAGT TCGGCGGTAG CTTTGCCACA
GTAACGCAAG GCATGAACGA CTTCTTTGCC AACGCCGAGG CCGAAGCGGC ACTGAACAGT
TCAGATATTC ATATCACCTT GCGCCAAGGT GATGGCTTTG GGGATTTCTT GAACAAGCAT
CCTGACCACT TCTCGCCCTT CGAGCAACAC ATGATCAAGT CATTCCCCCG CGCCAATGAT
GCGGGTCATT CCTGCGTGAT GCTCAAAGCG GGCGGGCTAG TGTCCTTTCA CCGGATTTTT
GCCGATCCAT GGTCGCGCGC CATGCTCTCA ACCGAGCCGA AAGAATTTGA GCATTGTGAG
AACCTTATTA AAGGCGGCAT GCCGTTACTC GATGCCATTG AACTGACAGC CCAACATTTC
TATCCCGATG ATATGGCTCG TTTTGATGCC ATTTTGTCCG CAGCAGCAAC CCACAAAGAG
GCCGCATAA
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| Protein sequence | MKQRIKNDLG ALYASSKQQH NHLHHELPYR IYDDAEQVFE NANSLGFGFA ISLFGGANDD
LIKTMNALVC TLPEGDKWHY QFVMVGNNQV GELIEQNQAL LKGRNAICDK FANNEAIYAK
HSSTKGFGTK LSSAYHYDLK NTKGFFFVST TEDMPALLDM RLGVESELAQ TGMHIRRLGA
DDLIEHCREH LNFSHQQDRV TPAKYNEYQP LNTQILSPDS EFIINRDSVN IRHTPMQSDN
SVDTTLINLG LKGLPNDFRL YAFPNCIASL SYTMNSVQCP YRVSVSFYIN KTGEQTTRND
SKIGSLTKTV NSPMRLLIPS AADELAERKE IQKGLSSHAF KITTMTLNVT LYTTEEKHRH
DTSKAIATFR TAGIDLIRNN KLQGMCTLST LPFSMSEGFM KDSQKAGLCF MMKTSNLVNF
LPIVADYKRL SAGLLLPTMR HQISYFDPFN CGSDNYNMAI TGGSGAGKSF FMQALVKSIF
AKGGKAWILD KGQSYKKLTQ TLGGVYLDSS QIFLNPFTHL GKVLSVRDAG TFGPILDDEG
QAIDPITEVL GNITALIATM ASPDEKLTGF QTALLGDAIL LAWQKCGNDT LIDDVQKALY
DIAAQKNDDT RISDIAAQLN KFCSSGIHGA IFNKPSMLDP NIDITTLELD GFKGELQRPV
IFALMVTISQ QMYLSGQRSI PKICVIEEAW SLMSGANAQS KDFINEGYRT VRKFGGSFAT
VTQGMNDFFA NAEAEAALNS SDIHITLRQG DGFGDFLNKH PDHFSPFEQH MIKSFPRAND
AGHSCVMLKA GGLVSFHRIF ADPWSRAMLS TEPKEFEHCE NLIKGGMPLL DAIELTAQHF
YPDDMARFDA ILSAAATHKE AA
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