| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4430 |
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| Symbol | |
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| ID | 5369294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009661 |
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| Strand | - |
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| Start bp | 47813 |
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| End bp | 49939 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640819226 |
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| Product | Type IV conjugative transfer system coupling protein TraD |
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| Protein accession | YP_001355448 |
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| Protein GI | 152998527 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 52 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCTTAA ACCCCAAACG TACTAAAGGC AGTAACTACA CCCGTGGTGG CCAGATTTTA
TTTCACAATT TGCGGATGTT CCTGCAGATT AACGCCGTGC TTATCCGCTG GACGTGTTAT
GGCGTGCTCA TCTTAACAGC GCTGCTATGC TACCTCTTCC TTGATAAAGA CACCTTAACG
GGCGCTTATT ATTATTGGAT AAACCAAACG GTTAGCGTGT TTAGACCAGA AAGCCATGTC
ATGCAAACTG AATGGCAAGG CACTGTCTAT ACCAGTACGT TAGGGTCTCA ATTGCAAAAC
CCGATACTGA TTGCGGCCAA CAGCCGCTTT TGGTTGTGGA CACAAATTTA CCTCCTTATT
AGCTGTGTAA TTGGCATCGT TTTCCTGTCC GTGGCCATGT GGTATTTCAA GAAAAAAGGG
GATGAGCAAA CCGAGGAACA TTTTATTCGG GGGATGCAAA AAGCCACGCC GAAGGAATTA
GCAAAACAGC TTAAAAAGGA CAGGCGTCAG TCCGATTTCA AGCTCGATGG CATCGGTATT
TTCAAAGAAC GCTTTGAAGT TCAGCACTTG TTACTTGATG GCACCACGGG CGCGGGAAAG
TCCGTGGCGC TGCGTAAGTT TTTAACGTGG ATACGTGAAC GGGGCGACAA AGCCATTATC
TATGACAAAG GCTGTACCTT TGTCAGTAAA TTTTATAATC CTGCAACGGA CGTACTACTA
AACCCGTTTG ATGAACGCTG TGCTTACTGG GATGTGTGGT GTGATGCGCA TGAGCCCTCA
GATTTTGAGA ACATGGCGAG CGCGCTCATT CCCCAACACG GCGAGGGCGA TCCATTCTGG
GTGCAATCTG CACGTACCAT TTTTTCATCT ACTGCATTTA AGATGCAAGA TGAACCTAAA
AAGAACCAAA CCACTGAACG ACTGCTTGAA CTCATGCTGA CCAGCGAACT TGAGTCCTTA
AGTGAGTATC TTAAAGGGAC CGAATCGGCC TCACTGGTAT CAGATAAAAT CCAAAAAACG
GCGATATCGA TTAAATCGGT CCTCGCGGCC TACATCAAAT CATTACGATT CCTTGCCGGA
CTGGATGAAA AGGACGAACA GGGAAAACTC CTTCGCCGCA AATTTTCAAT TCGTGAGTGG
GTGAAAAACG ATGCCGAAAA TGGCTTTCTA TTTCTATCCA GTAACGCACA GCAACATGCA
TCATTGCGCC CCTTGATCTC AATGTGGCTA TCCATTGCCT CGACCGCCAT TTTAGAACAA
GACGAAGATC CGGACCGCAG AATTTGGGTG TTGATGGATG AAGCACCAAG CTTGCACAAG
TTACCTGAAC TTGCCGAAAC AATCGCCGAA GTGCGTAAGT TCGGCGGCTG TTATGTCATA
GGCATTCAGT CTTTTGCGCA GCTTAAAAAA GTCTATGGCG AAAATGCGGC GCTTGAAATG
TTCGACTTGC TCAACACTCG GCTATTTTTC CGCTCACCCT CTAACGAAAT GGCCAAAATC
TCGTCTCACG ATTTAGGCGA GCAAGAAGTC GATGTCTCTA AAGAGCAATA CAGCTACGGC
GCTAATGAAA TCAGGGATGG CGTATCACTG GGCCATCAAA CCATTACCCG CCCTGTGGTC
ACGCCCTCTG AAATCATGCA GCTTGAAGAT TTACAATTTT GGCTGCGCAC GCCTGGCAAT
TATCCCGTGG TAAGAGTGGA TTTAGTCTTT AACCAAATGC GCTCACTGTG CGCCCCGTTT
ATCAAACGCA ACTACACCCC GTCTGAAAAC ATAAAGCAGA TTGAATGGAG TCTGAACTAT
CACCAGTTCA GTGCGGTTCA ACATGTCGAT AAGGCAGATA AAACCAAGCT CCAAAGCATT
CATGACACCA TGTATGAAGG GGATGAAAAC AATGATGAAC GCAGTGCGGA AGCGCAGCGC
ATGACCAAAC TTGCTGAAAA AACCGATGCG GTCGCCCAAA GCCTCATCGA TTCGAAAAAG
GCCAAGCCGA CTGAGTTAGC ACTCAAGGAT GCGCAGAAGA AAAAAGCCGC TGAAAAACAA
AAGGCCGCAG ACCAGCACAT TGAGGATGCA CAGCGACTTG AAGAGCAACA AATAGCCTCA
GTACATGAAG AAATATCGCT CGACTAA
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| Protein sequence | MTLNPKRTKG SNYTRGGQIL FHNLRMFLQI NAVLIRWTCY GVLILTALLC YLFLDKDTLT
GAYYYWINQT VSVFRPESHV MQTEWQGTVY TSTLGSQLQN PILIAANSRF WLWTQIYLLI
SCVIGIVFLS VAMWYFKKKG DEQTEEHFIR GMQKATPKEL AKQLKKDRRQ SDFKLDGIGI
FKERFEVQHL LLDGTTGAGK SVALRKFLTW IRERGDKAII YDKGCTFVSK FYNPATDVLL
NPFDERCAYW DVWCDAHEPS DFENMASALI PQHGEGDPFW VQSARTIFSS TAFKMQDEPK
KNQTTERLLE LMLTSELESL SEYLKGTESA SLVSDKIQKT AISIKSVLAA YIKSLRFLAG
LDEKDEQGKL LRRKFSIREW VKNDAENGFL FLSSNAQQHA SLRPLISMWL SIASTAILEQ
DEDPDRRIWV LMDEAPSLHK LPELAETIAE VRKFGGCYVI GIQSFAQLKK VYGENAALEM
FDLLNTRLFF RSPSNEMAKI SSHDLGEQEV DVSKEQYSYG ANEIRDGVSL GHQTITRPVV
TPSEIMQLED LQFWLRTPGN YPVVRVDLVF NQMRSLCAPF IKRNYTPSEN IKQIEWSLNY
HQFSAVQHVD KADKTKLQSI HDTMYEGDEN NDERSAEAQR MTKLAEKTDA VAQSLIDSKK
AKPTELALKD AQKKKAAEKQ KAADQHIEDA QRLEEQQIAS VHEEISLD
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