| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4429 |
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| Symbol | |
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| ID | 5369260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009661 |
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| Strand | - |
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| Start bp | 41601 |
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| End bp | 47561 |
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| Gene Length | 5961 bp |
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| Protein Length | 1986 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640819225 |
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| Product | conjugative transfer relaxase protein TraI |
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| Protein accession | YP_001355447 |
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| Protein GI | 152998526 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family
[TIGR02760] conjugative transfer relaxase protein TraI |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCCA TCAGTCCCAT TGCGTCGAGC GCTGGCGGCG CGGCCAGCTA CTACCTCAGT
GAAGAAAAGA ACCTCAATTT GCCTGACGTG TCGTTAGAAA AAGCAGCGGA CGCCAAAGAA
GGGGAAACCA ACTATTACTT GAAAGAGCAG AGCGCCGAGC CCAATACCCA ATGGTTTGGC
AAACTGGCAG AGCAAGAGGG AATGCTAGGT AAGCCCGTTG AAGAACATCA ACTCAAAGAG
GTGTTAGCCG GTAGCCTGAA CGACCAAACG CTTAAAACCC AAAACAGCAA CGCCCGCAAC
GGTTTTGACT TTACCTTTTC GGCGCCTAAA TCCGTCAGTT TGCTTGCACT CGTGGGCGGC
GATAAGCGCT TAATGACAGC GCACGATGAC GCGGTAAAAT TCGCGTTATC GCATATCGAG
AAAGATGCGG CGCAGGCCAG ACAAACTAAC CCTGATACCA AAGCGACCTC TTTTGAAAAC
ACGGGCAATT TGCTGTTTGC AATGGTGCGT CACAAAACCA GCCGTGAAGA AGATCCGCAG
CTGCACACCC ACTCACTCAC CGCCAACATG ACCAAGGACA GCGAGGGCAC ATTGCGCGCG
CTGGCAAGCA GCTTTAAACA AAAAGGCGGC ATCATCAATG GCACCGGTGA GCGGGTTTAT
AACCATCAAA AATACTATAC CTCGCTCTAT CAAAGCGCCT TAGCCCGCAG TGTTGAACAA
GCGGGTTATC AAACTCGTTC ACTGGGTAAT AATTTGTTTG AAGTCGAAGG TGTCCCGCAG
TCCTTGCTCG ATACCTTTTC AACCCGTAGC CAGCAAATCA ACGAACAAAC CCAAAGCTTA
GGTTTAGACT CCCAAGCGGC GCGGGATGTG GCCGCAAAGG ACACCCGCAA GAGTAAAGCC
TATACCAGCG AAGCCACCTT GTTTGAGCAA TGGAAAAACA AAGCCAATAA CAGCGGCTTT
AACCTGACAA GCTTCGTGAC GGACAGCATG TCACGAGAAA CATCACTCAA TGCGTTAGCG
CTCAAACCCG CCGCTATCGA TGCGGTGAGT CGTGCGATTG AGCACGCCAG TAACACCCAA
AACCGTTTTA ATTACGCGAA ATTAGTGGAA TCTGCCACGC TTGAATTTAC GCGCGGCCAG
AAGCTCGATG CGCTCGATAT TAAATTGGCA CTCGATAAGC ACATTGAAGA TGGCGCACTC
ATTCCGCTTG ATAAAGAGTC TGCGACCTTT ACCAGCGCCG CCCACATCAA AGCCGAAACT
AACCTGCTAG AGAGCATCAA GCCAAAAACG GCCAACATGC GCCAAGTGGT CGATACCAAC
ACGCTTCAAG GCAAAGGCTT AAATGCGGAC AACCAAAAGA AAGTCTCTGA ACTGTTCGCC
AGTACCAAAC AAGTTAACCT AGTGAACGTC TTTGGTAGCA GTGAACAGCT CGCGACCGCC
CTGCTCAATG TCGGTGAGGC CAACGGTAAA CGTATTCACA TCATTACCCC TGACATGAAA
AGCAAACTGC AAACCAGTGA ACGAGTGCAA CGCGATTCAT CGACTGTGGT GAAGTGGATA
ATGAACCACT TCAAACCCGA CCACACCCAT ACACTCAGCA GCTTTACTAA AACGGCCAAC
AACACTAACC GCGATATTTT AGTGGTTGAG AACGCCAATA AACTCGGCCT TAACGACTTT
AATGCCCTGC TCGCGCAAGC CAAAGCGGGT AACAGTAAAG TGATTTTGCT CAATCACGCC
AATGCCAAGC AAGGCATGAA AGCCGGTAAC GCTATCGAGG TACTTAAAAA AGGCAACGTA
AACGAAAGCA ACTGGGTCGC CACAAAACAA AGCAACACAG CCATGCGACT GCATGAAAGC
AAAGACAGTG ACAGGGTTAA CCTGATTGCA AAAACTTACG CGCAACTGCC CGAGAAGCAA
CACACCCAAG TCATTGCGGG CACCCATAAA GATGTGAAGC AGCTTAACAG CGCCATTCGC
GCAGAACTGC AAAATCAAGG TGATGTATCG CGCCTTGGGC TCAACATCCC TACCCTTAAT
CCCGTGTTCT TATCCGCGCA GCAACGGGAA GTCGTCGGCC AGTACACCAA GGGCATGGTA
CTCACCCAAT GGCAAAAAGT CGGTGGCCGC AATCAACAGC AGCAATTGAC GGTGGACAGT
GTAAACCGTG ATAACAACAC CCTCACGCTG ATAGACAAAA ACGGTAAAGC ATCTGAGATT
AACCCCAGCA GCAAAGCCTT TAAAGCCGCA GAGTACGTGA TCGCTAAACC GGACAATTTA
CATATCGCCA ACGGCGATAA ACTCATCATG GCCACAAACC ATCAAGACAG TGGTTTGAGC
AAACAAATTT ATACGATCAA CGCCCTGTCC AAAGAATGGG TCACGCTCAA AGACGAAAGC
GGCAAACAGC ACAGCGTTAA AGCCAGTGCA TTGCACCATG CGCCGCTCAA TCATGGTTAC
GCCACCACGC CAAGCAATGC CAGCCCTAAT GCAAGTCACC ACATCGTCAA CATTAAAGCC
TATAGCGCCT CAAAAGAGTG GTTACATGAC ACCCTGACAC AAGGCATCAA ACACATCGAT
ATATTCACCG ACAAGGCACA ACAATTTGAT GACCGATTAG AAAAAAGTGA GGTGAAACCA
TCCAGTATTT CGCGCATCAT GCAAGCCGCT GACATGCCAG AAAAGTTCGT GAATAGCCAA
ACCACGGCCC TGCTCACCCA AGATGTGACC GCAGCACTGA ATGCCATTGG TGCCCAGCAT
CAAGACAAAG GGCTTATTCA CAATGCCGTG GACTTTGCCA TCCAGCACAT TAGCGAGAAA
GAAGCCGGTT ACTCACAAAA AGAGCTGATT GTTAATGCGA TCAAGTACGC ATTTGAGGAA
AAAGGCACCA GCATTACCCA ACATGAAATC ATCAACACCC TGCAACACAT GGCCACGAAC
AGCACGGATA AAGGCGCGCC CTCACTCCTG AGCGCCGAAT ACCACGACGG CACCCGCTGG
ACAACCCAAG CCGCTATCGA TACCGAAGTG CGTATTTTAG ACAGACTGCA AGCGGGCAAA
GATCAACTTG CGCCCCTTAC CAGCGTTGAA CACGCCGCGC AGGTACTCAG TCAAAATCAA
AACCTGACCG ATGGCCAAAA AGACGCGACC TTGCTTATCA CCACCACCAA AGACCGATTT
GTGGGTGTTC AAGGGTTAGC GGGTACGGGT AAATCGACCA TGCTTGAAAC GGGTATCGAT
CTTGTTAAAC AAAGCGAATC CATTCTCAAC ACACAACCCA ATAAGACACC GACACAATTC
ATAGGTCTAG CGCCGACACA CGCCGCCGTT AACGAACTCA AAGACAAGAA CGTCGAAAGC
CAAACGGTGC AATCACTCCT AAGCAACTTT TTAAGCCAAG ATGCGAAACC TGACCAATAC
GCCAACACCG TGTTCTTGCT CGATGAATCC TCGATGACCA GTAACGCCCA AATGGATGAA
TTTACCCATT TGATTGAGAC AACAGGCGCG CGCGCCGTGT TCTTGGGTGA CACTAAACAG
TTAACGTCCC AAAAAGCGGG TAAACCTTTT GAACTCGCGT TAAACAAAGG CGCAATCAAT
AGCGTCACCA TGAAAGACAT TGTGCGCCAA CAGAACAGCA CGCTACTGAG TGCAGTACAC
AATATTGTCG ATCGCCAAGG CGAAAGCGCT ATTGATAAAA TTCAGCAACA ATTACCCTTT
GACCAATACA CCGCGCCCAC CGCGAACGAC GCGGTAACGC CCGAAAAGCA GGCTACCGCT
AACATCAATC AAAGCTTGAA TATCATTTCA ACTTTGCAGC CGCTAACTGA TAACCCAAAG
AAAAACCAGC AACTTGCGAC CGAAGCCCTG CCCGCCACTG TGGCACTGGA ATACTTGGCC
AGAACACCTA AAGCGCGTGA AAATACCCTT ATCATTGCGT ACACCAACAA AGAACGCGAC
GACATTACCC ACGAAATTCG CCAAGGGTTA CAGCAACAAA AAAGCCTCAG TACCGAGCAA
TTCACCGTGC CGCGATTACG CGGAGTTCAT GCCAGTAAGG CGGAACTGGC GACCATGTTG
CCCTATCAGC AGGGGTTAAT CCTGACGACC GGTAAAGACA GTTATTTTGA AATTATGAAG
GTTGATAAGC TCAATAACAT GCTCACCCTC GCGGATATGA AAACCGGCGA GGAAAAGCAT
TTCTTCCCCA AAAATCATGG TCACAAATTC ACGAACCTTT GGGCTAAGAG TGAGCAACCT
CTCGCAGAAG GCGACAGTAT CATGCTCCGC AAAAGCGATA TTGACCGTGA AATGCAGGGC
AACAAAACCT ATACCGTTAG CAGCATTGAC GATAAACAAA TGCAGCTCAA ATCCACGGAT
AACCACACAT TAACGCTCTC AACCAAAGAT TTGAAAGATG CTCATTGGGA TTACGCATAC
ACCCGCACCG CCGATATGGC GCAAGGGGCA ACCTATGAGA ATGTCATTAC CGCGATTAAG
GGCCAAGGTG CATTAACTAA CGTAAGGCGC GCGTATATCG ATATCACCCG TGCCAGTAAG
CACGTAAAAA TCATCACCGA TAACCCGCAA AAAATGATGC TCTCATGGGT CAATAACGAT
CCCAATAAAG TCTCTGCACT TGAGACAAGA GATAAGTATT ACCCTGAACA TACCCCGCTA
TTTAATGACA AACCCTTGCC GCAGGAAAAC CCAAAGTACC TCGATGTAAA TGGATATGTG
GATCTAAAAC TGATGGCCAC CGAGCTAAAT GCCAAGCTTC CGGCCTACAG TGAATCACTG
GCAACGCAGC TTTTAGGTGA GCCGAACCAC GATAAATCAG ACAAAGATAA CCTGACATTT
GGCAAAGAGG GGAGCCTAAC ATTGACCACA ACGGGCCAAT ATCGTGGCTA TTTTAAAGAC
TGGAAAACCG GCGATAAAGG CACCTTAATT AACCTGATTA TGGTCGCTGA AAAATGCAGT
TATAAAGATG CACTTTATAA AGCCGATAAA ATGATGAACG AACCCGATAA ATATAATCTG
GTAAAAAACC CACAGCATGA TGAATTAACA CATGCCATTC CGGTTAAGCA AAGCCAATTA
GAAGCGCGCG CGAAGCAATA CTTTAACGAA GCTAAACCTA TAGAAAACTC ACTCGCACAA
ACCTATTTAG CCAAGCAAGG AATCGAGGTT ACGAAGCATG AAAACTTACG GTTTCACGAT
GCCGTTTATT CGTCAGAAAA ACGTGGAACC TTCCCCGCAT TAATCGCGAA TATCACCAAT
GACAAGAGTG AAACCAAGGC AGTAGAAATC ACTTACCTTG ATAAATCCAG CGGTGACATT
GCAGCGCTAA AAATAAATAA GCGCATACTC GGCTCTAAAT CGGGGAACAG CACGACGATC
AACAAAGGCA ATAATTCAGA CTATAGTATT GTCGCTGTCG GTGTAGAGAA TGCGCTTAAG
ATAAATGCTG ACAATAAAAA CGGGGCTGAC GTTATTGCGC TAAATAATAA TAATGACACT
AAAACATTTA ATACAAATGA ATTGCGCGAA AACGTGATAG TGGTACTTGA TACTAATAAT
TCACAAGACA CTGCAAAACT GGCTAATGAC CTTACGGAAA AATTCAGTAA GGAAAATATA
CATGCGGTTA TTATTGAACC CAGTCTGATA CCTGACGGCT TAAACAAAGT CGAAACGACA
AAGCAATTAG TCAATGAAGC GGTCTATAGC ATAACGACAA AAGACAATAC ACTATCTAAA
GCCATTCAAT CATTGAGTCA TGATATTGCA GGCACAAAAA ATATCACGAT GAAAGATGAC
AGCACTAACG TAGCAACGAA TAAAATAAAG CACGATGAAC ACTATCAACA TTTAGCAATG
GATAGCCACC GTTCACCCAC GAAAGAACAT AGCCCCAACA TCGACAATCC TAAATTGGAT
ATTGGGGAAA AGACCATGTA A
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| Protein sequence | MLSISPIASS AGGAASYYLS EEKNLNLPDV SLEKAADAKE GETNYYLKEQ SAEPNTQWFG
KLAEQEGMLG KPVEEHQLKE VLAGSLNDQT LKTQNSNARN GFDFTFSAPK SVSLLALVGG
DKRLMTAHDD AVKFALSHIE KDAAQARQTN PDTKATSFEN TGNLLFAMVR HKTSREEDPQ
LHTHSLTANM TKDSEGTLRA LASSFKQKGG IINGTGERVY NHQKYYTSLY QSALARSVEQ
AGYQTRSLGN NLFEVEGVPQ SLLDTFSTRS QQINEQTQSL GLDSQAARDV AAKDTRKSKA
YTSEATLFEQ WKNKANNSGF NLTSFVTDSM SRETSLNALA LKPAAIDAVS RAIEHASNTQ
NRFNYAKLVE SATLEFTRGQ KLDALDIKLA LDKHIEDGAL IPLDKESATF TSAAHIKAET
NLLESIKPKT ANMRQVVDTN TLQGKGLNAD NQKKVSELFA STKQVNLVNV FGSSEQLATA
LLNVGEANGK RIHIITPDMK SKLQTSERVQ RDSSTVVKWI MNHFKPDHTH TLSSFTKTAN
NTNRDILVVE NANKLGLNDF NALLAQAKAG NSKVILLNHA NAKQGMKAGN AIEVLKKGNV
NESNWVATKQ SNTAMRLHES KDSDRVNLIA KTYAQLPEKQ HTQVIAGTHK DVKQLNSAIR
AELQNQGDVS RLGLNIPTLN PVFLSAQQRE VVGQYTKGMV LTQWQKVGGR NQQQQLTVDS
VNRDNNTLTL IDKNGKASEI NPSSKAFKAA EYVIAKPDNL HIANGDKLIM ATNHQDSGLS
KQIYTINALS KEWVTLKDES GKQHSVKASA LHHAPLNHGY ATTPSNASPN ASHHIVNIKA
YSASKEWLHD TLTQGIKHID IFTDKAQQFD DRLEKSEVKP SSISRIMQAA DMPEKFVNSQ
TTALLTQDVT AALNAIGAQH QDKGLIHNAV DFAIQHISEK EAGYSQKELI VNAIKYAFEE
KGTSITQHEI INTLQHMATN STDKGAPSLL SAEYHDGTRW TTQAAIDTEV RILDRLQAGK
DQLAPLTSVE HAAQVLSQNQ NLTDGQKDAT LLITTTKDRF VGVQGLAGTG KSTMLETGID
LVKQSESILN TQPNKTPTQF IGLAPTHAAV NELKDKNVES QTVQSLLSNF LSQDAKPDQY
ANTVFLLDES SMTSNAQMDE FTHLIETTGA RAVFLGDTKQ LTSQKAGKPF ELALNKGAIN
SVTMKDIVRQ QNSTLLSAVH NIVDRQGESA IDKIQQQLPF DQYTAPTAND AVTPEKQATA
NINQSLNIIS TLQPLTDNPK KNQQLATEAL PATVALEYLA RTPKARENTL IIAYTNKERD
DITHEIRQGL QQQKSLSTEQ FTVPRLRGVH ASKAELATML PYQQGLILTT GKDSYFEIMK
VDKLNNMLTL ADMKTGEEKH FFPKNHGHKF TNLWAKSEQP LAEGDSIMLR KSDIDREMQG
NKTYTVSSID DKQMQLKSTD NHTLTLSTKD LKDAHWDYAY TRTADMAQGA TYENVITAIK
GQGALTNVRR AYIDITRASK HVKIITDNPQ KMMLSWVNND PNKVSALETR DKYYPEHTPL
FNDKPLPQEN PKYLDVNGYV DLKLMATELN AKLPAYSESL ATQLLGEPNH DKSDKDNLTF
GKEGSLTLTT TGQYRGYFKD WKTGDKGTLI NLIMVAEKCS YKDALYKADK MMNEPDKYNL
VKNPQHDELT HAIPVKQSQL EARAKQYFNE AKPIENSLAQ TYLAKQGIEV TKHENLRFHD
AVYSSEKRGT FPALIANITN DKSETKAVEI TYLDKSSGDI AALKINKRIL GSKSGNSTTI
NKGNNSDYSI VAVGVENALK INADNKNGAD VIALNNNNDT KTFNTNELRE NVIVVLDTNN
SQDTAKLAND LTEKFSKENI HAVIIEPSLI PDGLNKVETT KQLVNEAVYS ITTKDNTLSK
AIQSLSHDIA GTKNITMKDD STNVATNKIK HDEHYQHLAM DSHRSPTKEH SPNIDNPKLD
IGEKTM
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