Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_6204 |
Symbol | soxB |
ID | 5359441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | + |
Start bp | 6409222 |
End bp | 6410472 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640815248 |
Product | sarcosine oxidase subunit beta |
Protein accession | YP_001351515 |
Protein GI | 152987436 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.194283 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGCT ACTCCGGCTT CGGCCTGTTA AAGCATTCAC TGAGCCATCA CGAGAACTGG CAACGCATGT GGCGCACGCC CACGCCGAAG CCGGTCTACG ACGTGGTCAT CGTCGGCGGC GGCGGGCACG GCCTGGCCAC CGCCTACTAC CTGGCCAAGG AACACGGCAT CAGCAACGTG GCGGTGGTCG AGAAAGGCTG GCTGGGCGGC GGCAACACCG CGCGCAACAC TACCATCGTG CGTTCCAACT ATCTGTGGGA CGAGTCCGCG CTGCTCTACG AGCACGCGAT GAAGCTGTGG GAGGGCCTGT CCCAGGACCT CAACTACAAC GTGATGTTCT CCCAGCGCGG GGTCTACAAC CTCTGCCATA CCCTCCAGGA CATGCGCGAC GGCGAGCGCC GGGTCAGCGC CAACCGCCTC AACGGCGTCG ACGGCGAACT GTTGAACGCG CAGCAGGTGG CGGAGGAGAT TCCCTATCTG GATTGCAGCA AGAACACCCG CTACCCGATC CTGGGCGCGA CCATCCAGCG TCGCGGCGGC GTCGCCCGCC ATGACGCGGT GGCCTGGGGC TTCGCCCGCG CCGCCGATGC CCTGGGCGTG GACCTGATCC AGCAGACCGA AGTCACCGGC TTCCGCAAGC AGGACGGCGC GGTGATCGGC GTCGAGACCA ACCGCGGTTT CATCGGCGCG CGTCGTGTCG GGGTGGTCAC CGCCGGCAAC TCCGGGCACA TGGCCAAGCT CGCCGGCTTC CGCCTGCCGC TGGAATCGCA CCCGTTGCAG GCCCTGGTCT CCGAGCCGCT GAAGCCGATC ATCGATAGCG TGATCATGTC CAACGCCGTG CATGGCTACA TCAGCCAGTC GGACAAAGGC GACCTGGTCA TCGGCGCCGG CATCGACGGC TACAACGGCT ACGGCCAGCG CGGCTCTTAC CCGGTGATCG AGCACACCCT GCAAGCCATC GTCGAGATGT TCCCGGTGCT CTCGCGGGTA CGCATGAACC GCCAGTGGGG CGGCATCGTC GACACCACCC CGGACGCCTG CCCGATCATC GGCAAGACTC CGGTGCAGAA CCTGTTCTTC AACTGCGGCT GGGGCACCGG CGGCTTCAAG GCCACTCCCG GCTCCGGCAA CGTCTTCGCC GCCACCCTGG CCAAGGGCGA ACCGCATCCG CTGGCCGCGC CCTTCTCCAT CGAACGCTTC CACAGCGGTG CGCTGATCGA CGAGCACGGC GCGGCGGCAG TGGCGCACTG A
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Protein sequence | MQRYSGFGLL KHSLSHHENW QRMWRTPTPK PVYDVVIVGG GGHGLATAYY LAKEHGISNV AVVEKGWLGG GNTARNTTIV RSNYLWDESA LLYEHAMKLW EGLSQDLNYN VMFSQRGVYN LCHTLQDMRD GERRVSANRL NGVDGELLNA QQVAEEIPYL DCSKNTRYPI LGATIQRRGG VARHDAVAWG FARAADALGV DLIQQTEVTG FRKQDGAVIG VETNRGFIGA RRVGVVTAGN SGHMAKLAGF RLPLESHPLQ ALVSEPLKPI IDSVIMSNAV HGYISQSDKG DLVIGAGIDG YNGYGQRGSY PVIEHTLQAI VEMFPVLSRV RMNRQWGGIV DTTPDACPII GKTPVQNLFF NCGWGTGGFK ATPGSGNVFA ATLAKGEPHP LAAPFSIERF HSGALIDEHG AAAVAH
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