| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_6162 |
|---|
| Symbol | choW |
|---|
| ID | 5355997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 6368458 |
|---|
| End bp | 6369297 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640815206 |
|---|
| Product | choline ABC transporter permease |
|---|
| Protein accession | YP_001351473 |
|---|
| Protein GI | 152986181 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03416] choline ABC transporter, permease protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCTGA CTGATCACAA GCTCCCGCTG GGAGAGCAGA TCGCCGGTTT CGTCGACTGG
CTGACCCTGC ATGGCGCATC GTTCTTCGAC AAGGTTTCCG ACACCCTGGA ATTTCTCATC
CACGGCGTCA CCAACGGACT GCTCTGGTTC AACCCGCTGG TGCTGATCGC CCTGCTGGTG
GGGCTGGTGC ACGTCATCCA GCGCAGCTGG GGGCTGACCG TGTTCGCCCT GGCCTCGCTG
CTGCTGATCC TCAACCTGGG CTACTGGCAG GAGACCATGG AAACCCTCGC CCAGGTGATA
TTCGCCACCT TGGTGTGCAT CGCCGTCGGC GTGCCGCTGG GGATCGTCGC CGCGCACAAG
CCGTGGTTCT ACACCGCGCT GCGGCCGCTG CTGGACCTGA TGCAGACGGT GCCGACCTTC
GTCTACCTGA TCCCGACCCT GACCCTGTTC GGCCTCGGCG TGGTGCCGGG GCTGATCTCC
ACGGTGATCT TCGCCGTCGC CGCGCCGATC CGCCTGACCT GCCTGGGTAT CCAGGACGTG
CCGGCGGAGT TGCTCGACGC CGGCAAGGCC TTCGGCTGCT CGCGCTGGCA ACTGCTGACG
CGCATCGAGC TGCCGCATGC GATGCCGAGC ATCGCCGCCG GCATCACCCA ATGCATCATG
CTCTCCCTGT CGATGGTGGT GATCGCCGCG CTGGTCGGCG CCGATGGCCT CGGCAAGCCG
GTGGTGAACG CGCTGAACAC CGCCGACATC TCCCTCGGCT TCGAAGCCGG CCTGGCCATC
GTCCTGCTCG CCATCCTGCT CGACCGGGTG TGCAAGCAGC GCGCCGTGAA GGGGAAATAA
|
|---|
| Protein sequence | MFLTDHKLPL GEQIAGFVDW LTLHGASFFD KVSDTLEFLI HGVTNGLLWF NPLVLIALLV
GLVHVIQRSW GLTVFALASL LLILNLGYWQ ETMETLAQVI FATLVCIAVG VPLGIVAAHK
PWFYTALRPL LDLMQTVPTF VYLIPTLTLF GLGVVPGLIS TVIFAVAAPI RLTCLGIQDV
PAELLDAGKA FGCSRWQLLT RIELPHAMPS IAAGITQCIM LSLSMVVIAA LVGADGLGKP
VVNALNTADI SLGFEAGLAI VLLAILLDRV CKQRAVKGK
|
|---|
| |