| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_6157 |
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| Symbol | betA |
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| ID | 5357019 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 6361236 |
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| End bp | 6362921 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640815201 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001351468 |
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| Protein GI | 152988353 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.103614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAGG AATTCGACTA CATCATCATC GGAGCCGGCT CCGCCGGTAA CGTACTCGCT
ACCCGCCTCA CCGAAGACGC TGACGTCAGC GTCCTGCTGC TCGAGGCCGG CGGTCCCGAC
TACCGCTTCG ATTTCCGCAC CCAGATGCCG GCGGCCCTGG CCTTCCCGCT GCAGGGGCGG
CGCTACAACT GGGCCTACGA GACCGACCCC GAGCCCTACA TGAACAACCG TCGCATGGAG
TGCGGCCGCG GCAAGGGCCT GGGCGGCTCC TCGCTGATCA ACGGCATGTG CTACATCCGC
GGCAATGCCC TGGACTTCGA CGGCTGGGCC AAGGAGCCGG GCCTGGAGGA CTGGAGCTAC
CTCGACTGCC TGCCGTACTT CCGCAAGGCG GAAACCCGCG ACATCGGTCC CAACGACTAC
CATGGCGGCG ACGGCCCGGT CAGCGTGACC ACGCCGAAGG CCGGCAACAA CCCGCTGTTC
CATGCGATGG TCGAGGCCGG CGTGCAGGCC GGCTATCCGC GAACCGAAGA CCTCAACGGC
TACCAGCAGG AAGGCTTCGG GCCCATGGAC CGCACCGTGA CCCCGGAGGG CCGTCGCGCT
GCCACCGGGC GCGGCTACCT GGACCAGGCC CGCGGCCGGC CCAACCTGAC CATCGTCACC
CACGCGCTGA GCGACCGCAT CCTGTTCAGC GGCAAGCGCG CCATTGGCGT CTCCTACCTG
GTCGGCAACG GCGACAATCC GGTCACCGCC CACGCCCGTC GCGAAGTGCT GGTATGCAGC
GGCGCGATCG CCTCGCCGCA ATTGCTGCAA CGCTCCGGCG TCGGCCCGGC GGCCCTGCTG
CGCGACCTGG ACATCCCGGT GGTGCATGAC CTGCCTGGCG TTGGCGCCAA CCTGCAGGAT
CACCTGGAAC TCTACCTGCA ATACGCCTGC AAGCAGCCGG TGTCGATCTA CCCGGCGACC
AAATGGTGGA ACCAGCCGGC CATCGGCGCC CAGTGGCTGT TCCTCGGCAA GGGTCTCGGC
GCCAGCAACC AGTTCGAGGC CGGCGGCTTC ATCCGTACCC GCGAGGCGTT CGAATGGCCG
AACATCCAAT TCCATTTCCT CCCGGTGGCG ATCAACTACA ACGGCAGCAA GGGCGTGCAG
GAGCATGGCT TCCAGGCGCA CATGGGCTCG ATGCGCTCGC CGAGCCGCGG GCGCATCCAC
CTGAAGTCCA GGGACCCGCG CCAGCATCCG AGCATCCTGT TCAACTACAT GTCCCACGAG
CAGGACTGGC AGGAGTTCCG CGACGGCATT CGGCTGACCC GCGAGATCAT GAACCAGCCG
GCGCTGGATC CCTATCGTGG CCGCGAATTG AGCCCGGGCG TGAACGTGCA GTCGGACGCC
GAACTCGACG AGTTCATCCG CAACCATGCG GAGACCGCTT TCCACCCATC CTGCTCGTGC
AAGATGGGCA GCGACGACAT GGCGGTGGTC GATGGCCAGG GACGGGTCCA TGGCATGGAA
GGGCTGCGAG TGGTGGATGC GTCGATCATG CCGCTGATCA TCACCGGCAA CCTCAACGCC
ACCACCATCA TGATGGCCGA GAAGATCGCC GACCGGATCC GCGGTCGCCA ACCACTGCCG
CGCAGCACGG CGAAGTATTA CGTGGCCGGG GACGCACCGG TCCGCGGCAA GCCCGTGCGG
GCCTGA
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| Protein sequence | MSQEFDYIII GAGSAGNVLA TRLTEDADVS VLLLEAGGPD YRFDFRTQMP AALAFPLQGR
RYNWAYETDP EPYMNNRRME CGRGKGLGGS SLINGMCYIR GNALDFDGWA KEPGLEDWSY
LDCLPYFRKA ETRDIGPNDY HGGDGPVSVT TPKAGNNPLF HAMVEAGVQA GYPRTEDLNG
YQQEGFGPMD RTVTPEGRRA ATGRGYLDQA RGRPNLTIVT HALSDRILFS GKRAIGVSYL
VGNGDNPVTA HARREVLVCS GAIASPQLLQ RSGVGPAALL RDLDIPVVHD LPGVGANLQD
HLELYLQYAC KQPVSIYPAT KWWNQPAIGA QWLFLGKGLG ASNQFEAGGF IRTREAFEWP
NIQFHFLPVA INYNGSKGVQ EHGFQAHMGS MRSPSRGRIH LKSRDPRQHP SILFNYMSHE
QDWQEFRDGI RLTREIMNQP ALDPYRGREL SPGVNVQSDA ELDEFIRNHA ETAFHPSCSC
KMGSDDMAVV DGQGRVHGME GLRVVDASIM PLIITGNLNA TTIMMAEKIA DRIRGRQPLP
RSTAKYYVAG DAPVRGKPVR A
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