Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_6064 |
Symbol | |
ID | 5358242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | + |
Start bp | 6268050 |
End bp | 6270035 |
Gene Length | 1986 bp |
Protein Length | 661 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640815108 |
Product | putative choline transporter |
Protein accession | YP_001351380 |
Protein GI | 152986479 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGACAC CCACCGCACC CCGGAGCACC CTGAACCCTC CGGTTTTCTT TACCTCCGCC GCCCTGATCC TGGCCCTGGT GCTGTTCACC GTCCTGCTCC AGGAAGAAGC GCAATCGCTG TTCAACCACG TCCAGCAGTG GATCATCACC AACGCCAGCT GGTTCTACGT CCTCGCCGTG GCGCTGATCC TGATCAGCGT GGTGTTCCTC GCCGTGAGTC GCTACGGCGA CATCAAGCTC GGCCCCGATC ACAGCCGGCC CGACTACCGC AACACCACCT GGTTCGCCAT GCTGTTTTCC GCCGGCATGG GCATCGGCCT GATGTTCTTC GGCGTCGCCG AGCCGGTGAT GCACTTCACC ACGCCGCCGG TGGGCGAGCC GAACACCGTG CAGGCGGCGA AGGAAGCGAT GAAGCTGACC TTCTTCCACT GGGGCCTGCA TGCCTGGGCG ATCTACGCCA TCGTCGCGCT GATCCTGGCC TTCTTCAGCT ACCGCCACGG CCTGCCGCTG ACCCTGCGCT CGGCGCTCTA CCCGTTGATC GGCGAACGTA TCTACGGCCC CATCGGCCAT GCGGTGGATA TCTTCGCGAT CATCGGCACC GTGTTCGGCG TCGCCACCTC CCTCGGCTAC GGCGTGCTGC AGATCAACAG CGGTTTCCAC CACCTGTTCG GCTGGCCGGT GAACCAGACC GTGCAGATCG CGCTGATCGC CGCCACCTGC GGCCTCGCCA CCCTCTCGGT GGCCAGCGGC CTGGACCGCG GCATCCGTAT CCTTTCCGAG CTGAACCTGA GCCTGGCGGT GGTATTGCTG CTGTTCGTGC TGGTCCTCGG GCCCACCGTG TTCCTCCTGC AGACCTACGT GCAGAACACC GGCGCCTACC TGTCGGACAT CGTCAACAAG ACCTTCAACC TGTACGCCTA CGAGCCCACC GACTGGATCG GCGGCTGGAC CCTGCTGTAC TGGGGCTGGT GGCTGTCCTG GTCGCCCTTC GTCGGCCTGT TCATCGCGCG CATCTCGCGC GGCCGGACGA TCCGCGAGTT CGTCTGCGGC GTGCTGTTCG TTCCCGCCGG CTTCACCCTG CTGTGGATGA CCGTGTTCGG CGACACCGCG ATCCACATGA TCCTCCAGGA TGGCTTCACC CAGCTCGCCG AGGTGGTCAA CCAGGACAGT TCGCTGGCGC TGTTCGCCTT CCTCGAGCAT TTCCCGCTGG GCAGCGTCAT CTCGATGATC GCGGTGCTGA TGGTGGTGGT GTTCTTCGTC ACCTCGGCCG ACTCCGGCGC CCTGGTGGTG GACATGCTGG CCTCCAGCGG CAAGGACCAC TCGCCGCTCT GGCAGCGGAT ATTCTGGTCG GTGCTGATGG GCGTGGTGGC CATCGCCCTG CTGCTCGCCG ACGGCCTCAA GGCCCTGCAG ACCGCCACCA TCGCCAGCGC CCTGCCGTTC TCCATCGTGC TCCTGGCGTC GATCTGGGGG CTGTTCAAGG CCCTGCACCT GGACGCCACC AAGCGCGGCA TCCGCTACCA GGCGCTGACC TTCTCCCGTC CCACCACGCG CGGCGCCGCG GGCGAGACGG ACGGTTGGCA GCGGCGCCTG CGCAACATCG CCATGTTCCC GCGGCGCAGC CACGTCAACC GCTTCATTTC CGAAGTGGCG CGACCGGCCT GCGAAGACGT CGCCAGCGAA CTGCGCAAGC AGGGCTACGA AGTCCAGGTG CAGGATGGCG AGGACGGCCG GGTGCGCCTG GAAGTCAGCC ACGGTGGCGA GGTCGACTTC ATCTACGAGG TCCGTCCGCG CGCCTTCACC ACGCCGAGCT TCGTGATGCG CGATACCGAG GACAGCAGCG AGGCGCGCAA GTACTTCCGC GCCGAGGTCC ACCTGCAGGA GGGCGGCCAG GACTACGACA TCATGGGCTG GAGCCGCGAC GGCGTGATCG GCGACATCCT CGACCAGTAC GAGCGGCACA TGCACTTCCT GCACGTGGTG CGCTGA
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Protein sequence | METPTAPRST LNPPVFFTSA ALILALVLFT VLLQEEAQSL FNHVQQWIIT NASWFYVLAV ALILISVVFL AVSRYGDIKL GPDHSRPDYR NTTWFAMLFS AGMGIGLMFF GVAEPVMHFT TPPVGEPNTV QAAKEAMKLT FFHWGLHAWA IYAIVALILA FFSYRHGLPL TLRSALYPLI GERIYGPIGH AVDIFAIIGT VFGVATSLGY GVLQINSGFH HLFGWPVNQT VQIALIAATC GLATLSVASG LDRGIRILSE LNLSLAVVLL LFVLVLGPTV FLLQTYVQNT GAYLSDIVNK TFNLYAYEPT DWIGGWTLLY WGWWLSWSPF VGLFIARISR GRTIREFVCG VLFVPAGFTL LWMTVFGDTA IHMILQDGFT QLAEVVNQDS SLALFAFLEH FPLGSVISMI AVLMVVVFFV TSADSGALVV DMLASSGKDH SPLWQRIFWS VLMGVVAIAL LLADGLKALQ TATIASALPF SIVLLASIWG LFKALHLDAT KRGIRYQALT FSRPTTRGAA GETDGWQRRL RNIAMFPRRS HVNRFISEVA RPACEDVASE LRKQGYEVQV QDGEDGRVRL EVSHGGEVDF IYEVRPRAFT TPSFVMRDTE DSSEARKYFR AEVHLQEGGQ DYDIMGWSRD GVIGDILDQY ERHMHFLHVV R
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