| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5897 |
|---|
| Symbol | |
|---|
| ID | 5359018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 6089591 |
|---|
| End bp | 6090793 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640814942 |
|---|
| Product | multidrug resistance protein |
|---|
| Protein accession | YP_001351215 |
|---|
| Protein GI | 152984272 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A)
[TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGG CACCCACCAT GACGACCGCC AACAGCGAAA CCCCGGCCGG CAACCCGAAG
CGCAAGCGCT GGCTGCTGAT CCTGCTCGCC GTGATCATCC TCGGCACCCT GGCCAGCGTG
GCCTGGGAAT TCTTCTATGG GCGCTGGCAC GAGGACACCG ACGACGCCTA CATCAACGGC
AACGTGGTAC AGATCACGCC GCAGATCGTC GGCACCGTGG TCAGCATCGG CGCCGACGAC
GGCGACCTGG TGCGCAAGGG CCAGGAGTTG GTGCGCTTCG ATCCCAGCGA CGCCGACATC
GCCCTGCAAC GCGCCGAGGC CAACCTGGCC CATACCGTGC GCCAGGTACG CGGCCTGTTC
AGCAACGTCG ACGGCTATCG CGCCGAGGTC GCCACCCGCA AGGTCGCGCT GGCCAAGGCC
GAGGCCGACT ACAGGCGGCG CAAGAACCTC GCCGACGACG GCGCCATTTC CCAGGAAGAA
CTGGCCCATG CCCGCGACGC CCTGGACAGC GCGAAAGCCT CGCTGACCAG CTCGGAACAG
CAGTTGAACA CCAACCGCGC GTTGGTCGAC GACACCCAGA TCACCTCCCA CCCGGACGTC
AAGGCCGCCG CCGCGCAACT GCGCCAGGCC TACCTGGACG ATGCCCGCTC GACCATCGTC
GCGCCGGTCA CCGGCTACGT CGCCAAGCGC AGCGTGCAGG TCGGCCAGCG CGTGCAACCG
GGCAATGCGC TGATGGCGGT GGTCCCGCTG GAGCAGATCT GGATCGACGC CAACTTCAAG
GAAACCCAGC TCAAGCACAT GCGTATCGGC CAGCCGGTGG AGATCCGCTC CGACCTCTAC
GGCAGCGACG TGCGCTACAG CGGCACCGTC GACAGCCTCG GCGTGGGCAC CGGCAGCGCG
TTCTCCCTGC TGCCGGCGCA GAACGCCACC GGCAACTGGA TCAAGATCGT CCAGCGGGTG
CCGGTGCGCA TCCATATCGA TCCGGAAGAA TTGCAGAAGC ATCCGCTGCG CATCGGCCTG
TCGATGGACG TCAAGGTCGA CCTGCATGAC CAGAGCGGCC CGGCCCTGGC CCAGCAGCCA
CCGCGCGAAG CGCTGTTCTC CACCGATGTC TACCAGCAGC AACTGGCCTC CGCCGACAAG
CTGATCGAAC GCCTGATCGA AGCCAACCTC GCCGAAGACC ACGGCAAGAC CGCCCAGCGT
TGA
|
|---|
| Protein sequence | MNEAPTMTTA NSETPAGNPK RKRWLLILLA VIILGTLASV AWEFFYGRWH EDTDDAYING
NVVQITPQIV GTVVSIGADD GDLVRKGQEL VRFDPSDADI ALQRAEANLA HTVRQVRGLF
SNVDGYRAEV ATRKVALAKA EADYRRRKNL ADDGAISQEE LAHARDALDS AKASLTSSEQ
QLNTNRALVD DTQITSHPDV KAAAAQLRQA YLDDARSTIV APVTGYVAKR SVQVGQRVQP
GNALMAVVPL EQIWIDANFK ETQLKHMRIG QPVEIRSDLY GSDVRYSGTV DSLGVGTGSA
FSLLPAQNAT GNWIKIVQRV PVRIHIDPEE LQKHPLRIGL SMDVKVDLHD QSGPALAQQP
PREALFSTDV YQQQLASADK LIERLIEANL AEDHGKTAQR
|
|---|
| |