Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_5702 |
Symbol | thiC |
ID | 5355226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 5870932 |
End bp | 5872815 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640814747 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_001351021 |
Protein GI | 152984267 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGCAA CGCAGAAGAA CAACATCACC CGCCTTGAGC AGCTCGACCG CCAGTCGACG CAGCCTTTCC CGAACTCGCG CAAGGTCTAC CTGACCGGCT CGCGCCCGGA CATACGCGTC CCGGTGCGGG AAATCTCCCT CGCCGACACC CCCACCGCCT TCGGCGGCGA AAAGAACCCG CCGGTGTTCG TCTATGACAC CTCCGGTCCG TATACCGACC CGGAGGTCCG CATCGACCTG CGTAAGGGCC TGCCTGACGT GCGTTCGCGC TGGATCGACG AGCGCGGCGA CACCGAGATC CTCCCCGGCC TGACTTCCGA GTTCGGCCAG GCGCGCCTGG CCGACGCCAG CCTCGATGCG CTGCGCTTCG CCCACGTGCG CACGCCGCGC CGGGCCAAGC CGGGCGCCAA CGTCTCGCAG ATGCATTACG CGAAGAAAGG CATCATCACC CCGGAGATGG AATACATCGC CATCCGCGAG AACATGAAGC TGCAGGAAGC CCGGGCCGCC GGCCTGCTCG ACCAGCAGCA CCCGGGGCAC AGCTTCGGCG CCAATATCCC GAAGGAAATC ACCCCCGAGT TCGTCCGCGA GGAAGTCGCC CGCGGCCGCG CGATCATTCC GGCGAACATC AACCACACCG AGCTTGAGCC GATGATCATC GGCCGCAATT TTCTGGTGAA GATCAACGGC AACATCGGCA ACAGCGCGCT GGGCTCGTCG ATCGAGGAAG AAGTGGAGAA GCTCACCTGG GGCATCCGCT GGGGCGCTGA CACGGTGATG GACCTGTCCA CCGGCAAGCA CATCCATGAA ACCCGCGAGT GGATCCTGCG CAACAGCCCG GTACCGATCG GCACCGTACC GATCTACCAG GCGCTGGAAA AGGTCAATGG CGTCGCCGAG GACCTGACCT GGGAAATCTT CCGCGACACC CTGATCGAAC AGGCCGAGCA GGGCGTCGAC TACTTCACCA TCCACGCCGG CGTGCTGCTG CGCTATGTGC CGCTGACCGC CAAGCGGGTC ACCGGCATCG TTTCCCGCGG CGGCTCGATC ATGGCCAAGT GGTGCCTGGC GCACCACAAG GAAAACTTCC TCTACACGCA TTTCGAAGAG ATCTGCGAAA TCATGAAGGC CTACGACGTC AGCTTCTCGC TGGGCGATGG CCTGCGCCCG GGCTCGGTGG CCGACGCCAA CGACGCCGCC CAGTTCGGTG AGCTGGAGAC CCTCGGCGAG CTGACCAAGA TCGCCTGGAA GCACGACGTG CAGGTGATGA TCGAAGGCCC CGGCCACGTG CCGATGCAAC TGATCAAGGA AAACATGGAC AAGCAGCTGG AGTGCTGCGA CGAGGCGCCG TTCTACACCC TCGGTCCGCT GACCACCGAC ATCGCTCCCG GCTACGACCA CATCACCTCG GGCATCGGCG CGGCGATGAT CGGCTGGTTC GGCTGCGCCA TGCTCTGCTA CGTCACGCCC AAGGAGCACC TGGGCCTGCC GAACAAGGAT GACGTGAAGA CCGGGATCAT CACCTACAAG ATCGCCGCCC ACGCCGCCGA CCTCGCCAAG GGCCACCCGG GCGCGCAGAT CCGCGACAAT GCGCTGTCCA AGGCGCGCTT CGAGTTCCGC TGGGAAGACC AGTTCAACCT CGGCCTGGAC CCGGACACCG CGCGGGCGTT CCATGACGAG ACGCTGCCGA AGGACTCGGC CAAGGTCGCG CACTTCTGCT CCATGTGCGG ACCGAAGTTC TGCTCGATGA AGATCACCCA GGAAGTCCGC GACTACGCCA AGGAGAACGG CCTGTCCGAC GAGAGCAAGG CCATCGAGGC CGGCTTCCAG GAGCAGGCGG CGCGCTTCAA GGATGAAGGT TCGGTGATCT ACAAGCAGGT GTAG
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Protein sequence | MSATQKNNIT RLEQLDRQST QPFPNSRKVY LTGSRPDIRV PVREISLADT PTAFGGEKNP PVFVYDTSGP YTDPEVRIDL RKGLPDVRSR WIDERGDTEI LPGLTSEFGQ ARLADASLDA LRFAHVRTPR RAKPGANVSQ MHYAKKGIIT PEMEYIAIRE NMKLQEARAA GLLDQQHPGH SFGANIPKEI TPEFVREEVA RGRAIIPANI NHTELEPMII GRNFLVKING NIGNSALGSS IEEEVEKLTW GIRWGADTVM DLSTGKHIHE TREWILRNSP VPIGTVPIYQ ALEKVNGVAE DLTWEIFRDT LIEQAEQGVD YFTIHAGVLL RYVPLTAKRV TGIVSRGGSI MAKWCLAHHK ENFLYTHFEE ICEIMKAYDV SFSLGDGLRP GSVADANDAA QFGELETLGE LTKIAWKHDV QVMIEGPGHV PMQLIKENMD KQLECCDEAP FYTLGPLTTD IAPGYDHITS GIGAAMIGWF GCAMLCYVTP KEHLGLPNKD DVKTGIITYK IAAHAADLAK GHPGAQIRDN ALSKARFEFR WEDQFNLGLD PDTARAFHDE TLPKDSAKVA HFCSMCGPKF CSMKITQEVR DYAKENGLSD ESKAIEAGFQ EQAARFKDEG SVIYKQV
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