Gene PSPA7_5552 details

Gene Information

• Locus tag: PSPA7_5552
• ID: 5353913
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: +
• Start bp: 5716374
• End bp: 5716991
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 640814597
• Product: putative lipoprotein
• Protein accession: YP_001350873
• Protein GI: 152983522
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATCACG GTGAAAGACT CAACGCCTGG ACCCACCTGG TCGGTGCGGT CGCCGCCTGC 
TCCGGCGCCG TCTGGCTGAC GGTCCTGGCA AGCCTCAACG GCAGTCCGTG GAAGATCGTC 
GGCGTCAGCG TCTACGGCGT CACCCTGACC CTGCTCTACA GCATTTCCAC CGCCTACCAC 
AGCGTGCGCG GGCGGGCGAA GGTGGTGATG CGCAAGCTCG ACCACCTGTC GATCTACCTG 
CTGATCGCCG GCACCTATAC CCCGTTCTGC CTGGTCACCC TGCGCGGCCC CTGGGGCTGG 
ACCCTGTTCG GCATCGTCTG GGGCCTGGCG CTGCTCGGCA TGCTCCAGGA GATCAAGCCG 
CGCTCCGAGG CGCGGGTATT GTCGGTGGTG ATCTACGCGG TGATGGGCTG GATCGTGCTG 
ATCGCGGTGA AACCGCTGCT CGCCGCCCTC GGCAGCGCCG GCTTCACCTG GCTGGCGGCC 
GGCGGCGTGC TCTACACCGT GGGCATCGTC TTCTACGCCT ACGATCACCG CTTCCGCCAC 
TGGCACGGTA TCTGGCACCT GTTCGTGATC GCCGGCAGCC TGCTGCATTT CGTGGCGATC 
TGGCGCTACG TGCTCTAG 

 

Protein sequence

MYHGERLNAW THLVGAVAAC SGAVWLTVLA SLNGSPWKIV GVSVYGVTLT LLYSISTAYH 
SVRGRAKVVM RKLDHLSIYL LIAGTYTPFC LVTLRGPWGW TLFGIVWGLA LLGMLQEIKP 
RSEARVLSVV IYAVMGWIVL IAVKPLLAAL GSAGFTWLAA GGVLYTVGIV FYAYDHRFRH 
WHGIWHLFVI AGSLLHFVAI WRYVL