| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5242 |
|---|
| Symbol | |
|---|
| ID | 5359462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | + |
|---|
| Start bp | 5394267 |
|---|
| End bp | 5398499 |
|---|
| Gene Length | 4233 bp |
|---|
| Protein Length | 1410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640814288 |
|---|
| Product | motility regulator |
|---|
| Protein accession | YP_001350574 |
|---|
| Protein GI | 152988008 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.435118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCGACCC CCTCGCAAAC CCCGTCGCCG CCTCCCGCCG GCGACCCGCT GACCGTTCCC
GTCCGCCAGG CAGCCAAGGG CGGTCTGCTG TTGCTGGTCG TGCTGATGCT CGGCTTGCTG
CTCTGGCAGA TATGCCAGGA ATTGCGCCAG CAGGAGCGCT TCGAACACGA ACGGGCCGCC
GCCCAGCTCG ACCGCCTGCA CGACCGCCTG TCCCTGACCC TCGAACTGAA GGCCCGCACC
GCCCTCGCGT TGCTGCCAGG AGCGCCGCCC GCCGAGCGCG ACGAGATCCG CCGCAGGCTG
TTGCCCCGGG TCAGCGATGC GCTGCCGCAG GTGCGGGCGC TGGAGTGGGT GGATGGCAAG
CCGCAAGCGG GCAATCCGCC ACTCTATGAC CGGCTGCGCC AGCACGCCGG TGCCGGTCTC
TATCACTATT GCCTCGATCC GCGCGATGGT GAATCTCTCT ATCTCACTCT GCGCGAACCC
GGCAGCCGCC GCGACAGCGG CTTCTGGCTG CTGCGCCTGG CCAGCGACAG CCTCGCCCAG
TGGAGTCCCG ACCTGCCGGC CGGCAACCTG CTCTGGCGCC TGGAAGACCA GTACGCCGGC
CGGGTGCTCT GGCATGCGCC GGGCAACGCG ACGTTGCTCG ACGACATGCA GAGCCTCGGC
GTGGAGCCCC TGCGCAACAG CGACTGGCAA TTGCGCGGGC TCCACGACAG CCCCCAGGTG
CGGCTCGGCC TGCTGCGGGG GATCGGCGGC GAACTGCTGA TATTCCTCCT GCTGGTCGGC
GTCACGGTGC TCACCCTGCT GCGCCTGCAT CGCGAACAGC AAGGCCTGCG CGCCATGACC
CTGGCCTCGC AACGCAGCCT GCGCCAGGCG GCCACGGCAC TGGCGGCGAT CGACGAGCGG
GTGCTGGTGA CCCGCGCCGA TGGCCGTCTC AGCTATCTCA ACCCGCAGGC CGAGCAACTC
TTCGGCATCA GCTCGGCGCA GGCGCGCCAG CATCATTTGC TGGGCCTGCT GCCAGACCTC
GAGCCGGGCT GGCTGAGCGA CGCCGCCGGC GATGGCGAAA CCCGCAGCGA ATTGCTGCCG
CTGCGGGTGC GCGGCGAACC ACGGGTGTTC ACCCTCAGCC GCCACCCGTT GGCCAGCCAT
ACGGAGGCCG CCCAGGCCTG GACCCTGCGC GAACGGATCC TCCAGGGCGG CCAGGTCTGG
GTGCTGCGCG ATGTCACCGA GGAGCAGCAC GCCCTCGGCG TCCTGGAAGA GACCCGGCGG
CGCTACCAGG ACATCTTCGA GGGCGTCGGC GTGGCGCTCT GCGTGCTGGA CCTGTCCGCC
CTGCGCCAGG CCCTGGCCGA GTACCGGCTG GAGACTCCCG CCGCGCTGCA TGCCTGGCTC
GCCGGGCGGC CCGCCCGGCA GCGCGAGCTG CTGGAGCGGA TCCGCATCAC CGAGATCAAC
GACCTTACCC GCCGCCTGCT GGGAATCGAC TCCACCGGCC AGGCCTGGCA GCGCCTTCTC
GACCACGGAC CGCTGCAACC GGACAGCCTG CGCCTGCAGG TGATCGAGGC CCTGATCGAG
CGCCGCCCGC TGCTCGAACT CGAAGCCACG CTGCGCAACG ACCGCGGCGC GCCGCGCCAC
CTGTGGCTGC AGCTGCGCCT GCCGGACAAC CCCGGCGAAT GGCACGCGGT GACCCTCAGC
CTGTCCGACG TCACCAGCCG CAAGGAAGTC GAGCTGTCGC TGATCGAGCG CGAGAAATTC
TGGTCGGACG CCGTGCAGGC GGTGCCCGAC ACCCTGTACA TCCATGACCT GAACGCGCGC
CGGGTGATCT TCAGCAACCA CCACCTGGGC CAGCAGCTTG GCTACGACCA GGAAGAACTG
GCACGGATGG GCGAGAACTT CTGGGAAACC CTGCTGCACC CCGACGACCA GGAATACTAC
TGGCGCATCC GCAACCTGCA GCACGTGGTC GGCGACGGCC TGCTGCTCGA CAGCCAGTTG
CGCTGGCGCC ACCGCGATGG CCGCTGGCAC TGGTTCGACA TCCGCGAACA GGCCTTCAGC
CGGGACCGCA GCGGCCGCGT GGCGCGCCTG ATCGGGGTGG CCAAGGACAT CACCTTCACC
GTCGAGGCGA ACAACGCGCT GCGCGAGAAC GGTCGGCGCT ACCGCATGCT GGCGGAGAAC
ATCAGCGACG TGATCTTCTC CACCGACGCC GAGCTCAACG CCAACTACGT CAGCCCCTCG
GTGCAGCACG TGTTCGGCTA CAGCCCGGAG TGGGCGCTGC TCAACGGTCT CCACCAGACG
GCCACCAATC CGCGCCAGCT GGGTCGCCTG AACGGCCTGT TGCGTCGCGT GCGGCATGCC
ATCGGCGACC GCGAGAAACT CGCCGAGCTG CGCGAGAATC CCGCCCAGCA CCTGTTCGCC
CTCGACTGCC TGCGCGCCGA TGGGCGCAAG ATCCCCATCG AACTGCGACT GGTCCTGATG
TGGGACGAAC ACGATCGCTT CGAGGGCCTG CTCGGCGTCG CCCGCGACAT CAGCCAGCAA
CGCCGCGCCG AACGCGAATT GCGGATGGCG GCGACGGTAT TCGAACACTC GACCGCGGCG
ATCATGGTCA CCGACCCGGC CGGCTATATC GTCCAGGTCA ACGACTCCTT CTCGCGCCTG
ACCGGCTACA GCCCGGCCGA CGTGCTCGAC CAGCAGCCAC GCCTGCTCAC CGCCGACCGC
CAGGAAGCCA ACCAGCTCAA GCACGTGCTC GCCAGCCTGC AGCACAGCGG CAGTTGGGAA
GGCGAGATCC TGCAGAAGCG CAAGACCGGC GAACTCTATC CCTCCTGGGT CGGGATCACC
GCGATCCGCG ACGAGGAAGG CGACCTGGTC AGCTTCGTCT GTTTCTTCAG CGACATCAGC
GAACGCAAGG CCAGCGAGCG ACGCATCCAC CGCCTGGCCT ACTACGACGC CCTCACCCAC
CTGCCCAATC GCACGCTGTT CCAGGACCGC CTGCACACCG CCCTGCAACA GGCCGAGCGC
AACGGCCAGT GGGTGGTGCT GATGTTCCTC GACCTCGACC GCTTCAAGCC GATCAACGAC
TCCCTCGGCC ATGCCGCCGG CGACCGCATG CTGCAGGAAG TGGCGACCCG CCTGAGCGCC
TGCGTCAGCC AGGACGACAC GGTGGCGCGC ATGGGCGGCG ACGAGTTCAC CCTGCTGCTG
CCGTCCCAGG GCGACCGCGA GATCGCCCTG AAGCGGGCGA TCCAGGTCGC CGAGCTGATC
CTCGGCCGCC TGGCCCGACC GTTCACCCTG GAAGGCCGCG AGTTCTTCGT CACCGCCAGC
ATCGGCGTGG CCCTGTCGCC ACAGGACGGC GCCGAGCTGA GCCTGCTGAT GAAGAACGCC
GACACGGCGA TGTACCACGC CAAGGAGATG GGCAAGAACA ACTTCCAGTT CTACCAGGCC
GAGATGAACG CCCGCGCCCT CGAGCGCCTG GAACTGGAAA GCGACCTGCG CCGCGCCCTC
GAACTGGGCG AGTTCGTCCT CCACTACCAG CCGCAGTTCA CCGGCGACGG GCGTCGCCTG
ACCGGCGCCG AGGCCCTGTT GCGCTGGCAG CACCCGCGCC GCGGGCTGGT TCCGCCGAGC
GAGTTCATTC CGGTACTGGA GGAGATCGGC CTGGTGGCCC AAGTCGGCGA CTGGCTGCTG
GCGGAAGCCT GCAAGCAGTT GCGTAGCTGG CACAAGGCCA AGGTACGGGT GCCGAAGGTC
TCGGTGAACC TCTCGGCACG CCAGTTCGCC GATGGCCAAC TGGGCGAGCG GATCGCCGCG
ATCCTCTACG AGACCGGCAT CCCGCCGGCC TGCCTGGAAC TGGAACTGAC CGAAAGCATC
CTGATGAGCG ACGTCGCCGA GGCCATGCAG ATCCTCTCCG GGCTCAAGCG CCTCGGCCTG
GCCATCGCGG TGGACGACTT CGGCACCGGC TACTCCTCGC TGAACTACCT CAAGCAGTTC
CCCATCGACG TGCTCAAGAT CGACCGCAGC TTCGTCGACG GCCTGCCCCA TGGCGAGCAG
GACGCGCAGA TCGCCCGGGC GATCATCGCC ATGGCCCACA GCCTGAACCT GATGGTGATC
GCCGAGGGCG TGGAAAGCCA GGCGCAGCTG GACTTCCTCC GCGAGCACGG CTGCGACGAG
GTGCAGGGCT ACCTGTTCGG CCGGCCGATG CCCGCCGAGC AGTTCGGCAT GCTCTACGCC
AGCGACGTAC TGTTCATGTT CAACGAGGCC TGA
|
|---|
| Protein sequence | MSTPSQTPSP PPAGDPLTVP VRQAAKGGLL LLVVLMLGLL LWQICQELRQ QERFEHERAA
AQLDRLHDRL SLTLELKART ALALLPGAPP AERDEIRRRL LPRVSDALPQ VRALEWVDGK
PQAGNPPLYD RLRQHAGAGL YHYCLDPRDG ESLYLTLREP GSRRDSGFWL LRLASDSLAQ
WSPDLPAGNL LWRLEDQYAG RVLWHAPGNA TLLDDMQSLG VEPLRNSDWQ LRGLHDSPQV
RLGLLRGIGG ELLIFLLLVG VTVLTLLRLH REQQGLRAMT LASQRSLRQA ATALAAIDER
VLVTRADGRL SYLNPQAEQL FGISSAQARQ HHLLGLLPDL EPGWLSDAAG DGETRSELLP
LRVRGEPRVF TLSRHPLASH TEAAQAWTLR ERILQGGQVW VLRDVTEEQH ALGVLEETRR
RYQDIFEGVG VALCVLDLSA LRQALAEYRL ETPAALHAWL AGRPARQREL LERIRITEIN
DLTRRLLGID STGQAWQRLL DHGPLQPDSL RLQVIEALIE RRPLLELEAT LRNDRGAPRH
LWLQLRLPDN PGEWHAVTLS LSDVTSRKEV ELSLIEREKF WSDAVQAVPD TLYIHDLNAR
RVIFSNHHLG QQLGYDQEEL ARMGENFWET LLHPDDQEYY WRIRNLQHVV GDGLLLDSQL
RWRHRDGRWH WFDIREQAFS RDRSGRVARL IGVAKDITFT VEANNALREN GRRYRMLAEN
ISDVIFSTDA ELNANYVSPS VQHVFGYSPE WALLNGLHQT ATNPRQLGRL NGLLRRVRHA
IGDREKLAEL RENPAQHLFA LDCLRADGRK IPIELRLVLM WDEHDRFEGL LGVARDISQQ
RRAERELRMA ATVFEHSTAA IMVTDPAGYI VQVNDSFSRL TGYSPADVLD QQPRLLTADR
QEANQLKHVL ASLQHSGSWE GEILQKRKTG ELYPSWVGIT AIRDEEGDLV SFVCFFSDIS
ERKASERRIH RLAYYDALTH LPNRTLFQDR LHTALQQAER NGQWVVLMFL DLDRFKPIND
SLGHAAGDRM LQEVATRLSA CVSQDDTVAR MGGDEFTLLL PSQGDREIAL KRAIQVAELI
LGRLARPFTL EGREFFVTAS IGVALSPQDG AELSLLMKNA DTAMYHAKEM GKNNFQFYQA
EMNARALERL ELESDLRRAL ELGEFVLHYQ PQFTGDGRRL TGAEALLRWQ HPRRGLVPPS
EFIPVLEEIG LVAQVGDWLL AEACKQLRSW HKAKVRVPKV SVNLSARQFA DGQLGERIAA
ILYETGIPPA CLELELTESI LMSDVAEAMQ ILSGLKRLGL AIAVDDFGTG YSSLNYLKQF
PIDVLKIDRS FVDGLPHGEQ DAQIARAIIA MAHSLNLMVI AEGVESQAQL DFLREHGCDE
VQGYLFGRPM PAEQFGMLYA SDVLFMFNEA
|
|---|
| |