Gene PSPA7_5190 details

Gene Information

• Locus tag: PSPA7_5190
• Symbol: fimU
• ID: 5358010
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa PA7
• Kingdom: Bacteria
• Replicon accession: NC_009656
• Strand: +
• Start bp: 5337011
• End bp: 5337517
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640814236
• Product: type 4 fimbrial biogenesis protein FimU
• Protein accession: YP_001350522
• Protein GI: 152984948
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4970] Tfp pilus assembly protein FimT
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.875037
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATACC GTTCCAGCTC GGCCGGCTTC ACCCTGATCG AGCTGCTGAT CATCGTCGTC 
CTGCTGGCCA TCATGGCGAG CTTCGCCATC CCCAACTTCA AGCAGTTGAC CGAGCGCAAC 
GAACTGCAGA GTGCCAGCGA GGAACTCAAC GCGATGTTGC AGTACGCCCG CAGCGAAGCC 
GTCTCCCAGC GCCGCGCGAT CAGCATCCAG GCGCTGAAGG ACCACGACTG GGGCAAGGGC 
CTGAGCATCG GCGTCCTCGA CTCCGGCACG ATCGCCGCAC CGCTGCGCAA GCACGACGGC 
TTTCGCGGCG CCACGCTGAC AGCCAGGGAA GAGAGCGCCA TAGCCGAACT GACCTTCACG 
CCCAACGGGA CCCTGCTGCC GCCCACGGAG CGGACCTTCG CCATCTGCCA GAACGGCAAG 
GCCGAGGGCG GCCGCCTGCT GCGCATCAGC CAGGCCGGAC GGATCCAACT CGAACCTTCC 
TCCAAGGCAC CGCCGTCATG CTATTGA 

 

Protein sequence

MSYRSSSAGF TLIELLIIVV LLAIMASFAI PNFKQLTERN ELQSASEELN AMLQYARSEA 
VSQRRAISIQ ALKDHDWGKG LSIGVLDSGT IAAPLRKHDG FRGATLTARE ESAIAELTFT 
PNGTLLPPTE RTFAICQNGK AEGGRLLRIS QAGRIQLEPS SKAPPSCY