| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5188 |
|---|
| Symbol | thiO |
|---|
| ID | 5355497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 5335167 |
|---|
| End bp | 5336381 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640814234 |
|---|
| Product | glycine oxidase ThiO |
|---|
| Protein accession | YP_001350520 |
|---|
| Protein GI | 152985950 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCTCGTAT CATTCCGCGT TGGTCGTATC TCGCCGGATT TGCCGGGTTG CCTCAATCAG
CGGCTGGTAG AGGCGCATGA GCGACTTTTC TGCAACCCCT GTGTGATCGT GGAGGCCCTG
GTGTCGGAAC GAGTAGTAGT GGTGGGCGCT GGCGTCATCG GCCTGTTGAC CGCCCGGGAG
CTGGCGCTCG CCGGCCTGCG GGTGACCCTG GTGGAACGCG GCGAGAGTGG CCGGGAGGCT
TCGTGGGCGG GCGGCGGGAT CGTCTCGCCG CTCTATCCGT GGCGCTACAG TCCGGCGGTG
ACCGCCCTGG CGCATTGGTC GCAGGACTTC TACCCGGCGC TGGGGCAGCG CCTGCTCGAC
GAGACCGGGC TGGACCCCGA GGTCCACACC GTGGGCCTGT ACTGGCTGGA CCTGGAGGAT
CAGGCCGAGG CATTGCATTG GGCGCGCAAT CACACACGGC CGTTGCAGGA GGTGCCGATC
GAGGACGCCT ATGCGGCGGT GCCCGGGTTG GGCGCAGGCT TCCAGCGGGC CGTCTACATG
TCGGGCGTGG CCAATGTGCG CAATCCTCGC CTGGCGCGTT CATTGCGGGC ATCCCTGCAA
CAATTCGCCA ACCTCGAACT GCATGAACAG ACGGAGGTGC GCGGCTGGTT GCGTGACGGT
GATCGAGTGG TCGGCGTGGC CACCTCGCGA GGCGAGATCC GTGGCGACAG GCTGCTGCTG
GCGGCGGGAG CCTGGAGCGG CGAGCTGCTG AAGCCGCTGG GGCTGGAGTT GCCCGTCGAG
CCGGTGAAAG GGCAGATGAT TCTCTACAAG TGCGCGGCGG ACTTCCTGCC GCGCATGGTA
CTGGCCAAGG GGCGCTATGC GATCCCTCGG CGCGACGGGC ATATCCTGAT CGGCAGCACC
CTGGAGCATG CGGGCTTCGA CAAGACGCCG ACCGGGGACG CGCTGGACAG TCTCAGGGCC
TCGGCGGCCG AACTGCTACC GGCGCTGGCG GAGCAGCGGC CGGTGGCGCA CTGGGCGGGC
TTGCGGCCGG GATCTCCGGA AGGCATTCCT TATATCGGCC CGGTGCCGGG CTTCGACGGG
CTCTGGCTGA ATACCGGGCA TTACCGCAAC GGCCTGGTCC TGGCGCCGGC TTCCTGCCGC
CTGCTGGCGG ACCTGATGAG CGGCCGCGAG CCGATCATCG ATCCGGCGCC CTATGCCCCG
GTGGGCAGGC TCTGA
|
|---|
| Protein sequence | MLVSFRVGRI SPDLPGCLNQ RLVEAHERLF CNPCVIVEAL VSERVVVVGA GVIGLLTARE
LALAGLRVTL VERGESGREA SWAGGGIVSP LYPWRYSPAV TALAHWSQDF YPALGQRLLD
ETGLDPEVHT VGLYWLDLED QAEALHWARN HTRPLQEVPI EDAYAAVPGL GAGFQRAVYM
SGVANVRNPR LARSLRASLQ QFANLELHEQ TEVRGWLRDG DRVVGVATSR GEIRGDRLLL
AAGAWSGELL KPLGLELPVE PVKGQMILYK CAADFLPRMV LAKGRYAIPR RDGHILIGST
LEHAGFDKTP TGDALDSLRA SAAELLPALA EQRPVAHWAG LRPGSPEGIP YIGPVPGFDG
LWLNTGHYRN GLVLAPASCR LLADLMSGRE PIIDPAPYAP VGRL
|
|---|
| |