Gene PSPA7_5035 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPA7_5035 
SymbolrpoN 
ID5359592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas aeruginosa PA7 
KingdomBacteria 
Replicon accessionNC_009656 
Strand
Start bp5187742 
End bp5189235 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content63% 
IMG OID640814081 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001350371 
Protein GI152987329 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.111129 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCAT CGCTAGTCCT CAAGATGGGC CAGCAGCTGA CGATGACGCC TCAGCTGCAA 
CAGGCCATAC GCCTCCTCCA GCTCTCCACC CTGGACCTCC AGCAGGAAAT CCAGGAAGCG
CTGGAATCCA ATCCCATGCT CGAACGCCAG GAAGACGGCG ACGATTTCGA CGGCAGCGAC
CCGCTCGCCG ATGGCGCCGA ACAGGCAACC AGCGCGCCGC AGGAGAGCGC CCTCCAGGAA
AGCACCACAC CCAGCGTAGA AAGCCTCGAC GACGACCAGT GGAGCGAGCG CATCCCCAGC
GAACTGCCGG TGGATACCGC CTGGGAGGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCC
AGCAGCGACG ACGACGAATG GGACTTCACC GCGCGCACCA GCAACGGCGA GAGCCTGCAC
AGCCACCTGC TCTGGCAGGT GAACCTGGCG CCGATGTCGG ACACCGACCG CATGATCGCG
GTGACCATCA TCGACAGCAT CAACAATGAC GGCTATCTGG AGGAGTCCCT CGAGGAGATC
CTCGCCGCCC TCGATCCGGA GCTGGACGTC GAGCTCGACG AAGTCGAAGT CGTGCTGCGC
CGCATCCAGC AGCTGGAGCC CGCCGGCATC GGCGCTCGCA ACCTGCGCGA GTGCCTGTTG
CTGCAACTGC GCCAGCTGCC ACCCGCCACG CCCTGGCTGG ACGAAGCCCT GCGCCTGGTT
TCCGACTACC TCGACCTGCT CGGCGGCCGC GACTACGGCC AGTTGATGCG GCGCATGAAG
CTCAAGGAAG ACGAGTTGCG CCTGGTCATC GAGCTGATCC AGTGCCTGCA TCCACGGCCC
GGCTCGCAGA TCGAGTCGAG CGAGGCCGAA TACATCGTCC CGGACGTCAT CGTGCGCAAG
GACAACGAGC GCTGGCTGGT GGAACTGAAC CAGGAGGCGA TGCCACGCCT GCGTGTCAAC
GCCACCTATG CCGGCATGGT CCGCCGTGCC GACAGCAGTG CCGACAATAC CTTCATGCGC
AACCAGTTGC AGGAAGCGCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAGACGCTG
ATGAAGGTGG CGACGCAGAT CGTCGAACAC CAGCGTGGCT TCCTCGACTA CGGCGAGGAA
GCCATGAAGC CGCTGGTCCT GCACGACATC GCCGAAGCGG TGGGTATGCA CGAGTCGACC
ATTTCGCGGG TCACCACGCA GAAATATATG CATACGCCGC GCGGTATTTT CGAGCTGAAA
TATTTCTTTT CAAGTCACGT CAGTACCGCC GAAGGCGGGG AATGCTCGTC CACCGCGATC
CGCGCGATCA TCAAGAAACT GGTGGCCGCG GAAAATGCGA AAAAGCCATT GAGCGACAGC
AAGATCGCTG GTTTACTGGA GGCACAGGGC ATTCAAGTGG CTCGCCGCAC CGTCGCCAAG
TACCGCGAAT CCCTGGGCAT AGCCCCTTCG AGCGAGCGCA AGCGACTGGT GTGA
 
Protein sequence
MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGDDFDGSD 
PLADGAEQAT SAPQESALQE STTPSVESLD DDQWSERIPS ELPVDTAWED IYQTSASSLP
SSDDDEWDFT ARTSNGESLH SHLLWQVNLA PMSDTDRMIA VTIIDSINND GYLEESLEEI
LAALDPELDV ELDEVEVVLR RIQQLEPAGI GARNLRECLL LQLRQLPPAT PWLDEALRLV
SDYLDLLGGR DYGQLMRRMK LKEDELRLVI ELIQCLHPRP GSQIESSEAE YIVPDVIVRK
DNERWLVELN QEAMPRLRVN ATYAGMVRRA DSSADNTFMR NQLQEARWFI KSLQSRNETL
MKVATQIVEH QRGFLDYGEE AMKPLVLHDI AEAVGMHEST ISRVTTQKYM HTPRGIFELK
YFFSSHVSTA EGGECSSTAI RAIIKKLVAA ENAKKPLSDS KIAGLLEAQG IQVARRTVAK
YRESLGIAPS SERKRLV