Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_5035 |
Symbol | rpoN |
ID | 5359592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | + |
Start bp | 5187742 |
End bp | 5189235 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640814081 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001350371 |
Protein GI | 152987329 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.111129 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACCAT CGCTAGTCCT CAAGATGGGC CAGCAGCTGA CGATGACGCC TCAGCTGCAA CAGGCCATAC GCCTCCTCCA GCTCTCCACC CTGGACCTCC AGCAGGAAAT CCAGGAAGCG CTGGAATCCA ATCCCATGCT CGAACGCCAG GAAGACGGCG ACGATTTCGA CGGCAGCGAC CCGCTCGCCG ATGGCGCCGA ACAGGCAACC AGCGCGCCGC AGGAGAGCGC CCTCCAGGAA AGCACCACAC CCAGCGTAGA AAGCCTCGAC GACGACCAGT GGAGCGAGCG CATCCCCAGC GAACTGCCGG TGGATACCGC CTGGGAGGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCC AGCAGCGACG ACGACGAATG GGACTTCACC GCGCGCACCA GCAACGGCGA GAGCCTGCAC AGCCACCTGC TCTGGCAGGT GAACCTGGCG CCGATGTCGG ACACCGACCG CATGATCGCG GTGACCATCA TCGACAGCAT CAACAATGAC GGCTATCTGG AGGAGTCCCT CGAGGAGATC CTCGCCGCCC TCGATCCGGA GCTGGACGTC GAGCTCGACG AAGTCGAAGT CGTGCTGCGC CGCATCCAGC AGCTGGAGCC CGCCGGCATC GGCGCTCGCA ACCTGCGCGA GTGCCTGTTG CTGCAACTGC GCCAGCTGCC ACCCGCCACG CCCTGGCTGG ACGAAGCCCT GCGCCTGGTT TCCGACTACC TCGACCTGCT CGGCGGCCGC GACTACGGCC AGTTGATGCG GCGCATGAAG CTCAAGGAAG ACGAGTTGCG CCTGGTCATC GAGCTGATCC AGTGCCTGCA TCCACGGCCC GGCTCGCAGA TCGAGTCGAG CGAGGCCGAA TACATCGTCC CGGACGTCAT CGTGCGCAAG GACAACGAGC GCTGGCTGGT GGAACTGAAC CAGGAGGCGA TGCCACGCCT GCGTGTCAAC GCCACCTATG CCGGCATGGT CCGCCGTGCC GACAGCAGTG CCGACAATAC CTTCATGCGC AACCAGTTGC AGGAAGCGCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAGACGCTG ATGAAGGTGG CGACGCAGAT CGTCGAACAC CAGCGTGGCT TCCTCGACTA CGGCGAGGAA GCCATGAAGC CGCTGGTCCT GCACGACATC GCCGAAGCGG TGGGTATGCA CGAGTCGACC ATTTCGCGGG TCACCACGCA GAAATATATG CATACGCCGC GCGGTATTTT CGAGCTGAAA TATTTCTTTT CAAGTCACGT CAGTACCGCC GAAGGCGGGG AATGCTCGTC CACCGCGATC CGCGCGATCA TCAAGAAACT GGTGGCCGCG GAAAATGCGA AAAAGCCATT GAGCGACAGC AAGATCGCTG GTTTACTGGA GGCACAGGGC ATTCAAGTGG CTCGCCGCAC CGTCGCCAAG TACCGCGAAT CCCTGGGCAT AGCCCCTTCG AGCGAGCGCA AGCGACTGGT GTGA
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Protein sequence | MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGDDFDGSD PLADGAEQAT SAPQESALQE STTPSVESLD DDQWSERIPS ELPVDTAWED IYQTSASSLP SSDDDEWDFT ARTSNGESLH SHLLWQVNLA PMSDTDRMIA VTIIDSINND GYLEESLEEI LAALDPELDV ELDEVEVVLR RIQQLEPAGI GARNLRECLL LQLRQLPPAT PWLDEALRLV SDYLDLLGGR DYGQLMRRMK LKEDELRLVI ELIQCLHPRP GSQIESSEAE YIVPDVIVRK DNERWLVELN QEAMPRLRVN ATYAGMVRRA DSSADNTFMR NQLQEARWFI KSLQSRNETL MKVATQIVEH QRGFLDYGEE AMKPLVLHDI AEAVGMHEST ISRVTTQKYM HTPRGIFELK YFFSSHVSTA EGGECSSTAI RAIIKKLVAA ENAKKPLSDS KIAGLLEAQG IQVARRTVAK YRESLGIAPS SERKRLV
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