Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPA7_4869 |
Symbol | |
ID | 5356450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa PA7 |
Kingdom | Bacteria |
Replicon accession | NC_009656 |
Strand | - |
Start bp | 5020237 |
End bp | 5021502 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640813915 |
Product | putative type II secretion system protein |
Protein accession | YP_001350205 |
Protein GI | 152983611 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.192053 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGGCCTG CATTCGGCGC GCCGGCGGAC GGCGGCGGTT TCCACTATCG CCAGGAGCAG GATATCCAGG CGCTGAAGCT GCGCCTGCAC CGCTACATCA TCGACGAGAT CGACGAAGAT GGCATGAACC TGCTGGAAGG CGCTCGCGGC GCGGTGGTCC AGTACGTTTC GGAAAAGGTC TGCGAATACG GCTCGCGCCA CCAACTGGCG ATCTCCCGCT ATGAACTGGA TCGTCTGGCC GAGGAACTGG TCGACGAACT CACCGGTTTC GGCCCGCTGG AAATCCTGTT GCGCGACCCC GGCGTCTCGG AAATCCTGGT CAACGGACCG GGGCGGGTGT TCATCGAGCG GGAAGGGCGG CTCTACCAGA GCGACCTGCG TTTCATCGAC GATCATCATG TGCTGCGCGT GATCCAGCGC ATCCTCGCGC CGCTCGGGCG GCGCCTGGAC GAGTCCAGCC CGATGGTCGA CGCGCGCCTG CCGGACGGCA GCCGGGTCAA TGCGATCATC CCGCCGGTGG CGCTGGACGG ACCGTGCATC TCGATCCGCA AGTTCAGCCA GGAACTGCTG CGCAGCGCCG ACCTGCTGGC CTACCAGAGC GTCGACGAGG CCTTGCTGGA GTTCCTCCGC CAGGCCGTCT CGCGGCGTTG CAACATCCTC ATCAGCGGCG GCACCGGTAC CGGCAAGACC ACCCTGCTCA ACGTCATCAG CGGTTTCATC GACCCGCGCG AACGGATCGT CACCATCGAG GACACTGCCG AACTGCAACT CGGTCACGAC CATGTGGTGC GCCTGGAAAC CCGTCCGCCG AACGCCGAGG GCTATGGCGA GGTGACCGCC CGCGACCTGA TCCGCAATGC CCTGCGGATG CGCCCGGACC GGATCATCCT CGGCGAGATC CGCGGGGTCG AGGTGCTCGA CGTGCTGCAG GCGATGAATA CCGGCCACGA TGGCTCGATG AGCACGGTGC ACGCCAACTC GGCGATGGAC TCGCTGCTGC GCATGGAGAT GCTGGTCGGC CTCACCGGCA ACAGGTTGCC GGAGCAGACC CTGCGCCTGA TGATCTGCGC CGCGCTCGAC GTGGTGGTAC AGATCACCCG CCTGGCCAGC GGTCGGCGTT GCATCAGCGA AGTGCTGGAG GTGCTGGAGG TGCGCGACGG CATATACGTC ACCAATACCC TGTTCAGCCT CGACCGGCGT GGCAGCGGCC AGTTCGTCCG CCAGGCCGCG CCGGTCGGCC AGAAGTTCCG CCAGGAGCTG TTGTGA
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Protein sequence | MRPAFGAPAD GGGFHYRQEQ DIQALKLRLH RYIIDEIDED GMNLLEGARG AVVQYVSEKV CEYGSRHQLA ISRYELDRLA EELVDELTGF GPLEILLRDP GVSEILVNGP GRVFIEREGR LYQSDLRFID DHHVLRVIQR ILAPLGRRLD ESSPMVDARL PDGSRVNAII PPVALDGPCI SIRKFSQELL RSADLLAYQS VDEALLEFLR QAVSRRCNIL ISGGTGTGKT TLLNVISGFI DPRERIVTIE DTAELQLGHD HVVRLETRPP NAEGYGEVTA RDLIRNALRM RPDRIILGEI RGVEVLDVLQ AMNTGHDGSM STVHANSAMD SLLRMEMLVG LTGNRLPEQT LRLMICAALD VVVQITRLAS GRRCISEVLE VLEVRDGIYV TNTLFSLDRR GSGQFVRQAA PVGQKFRQEL L
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