| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_4825 |
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| Symbol | gspD1 |
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| ID | 5355508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa PA7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009656 |
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| Strand | - |
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| Start bp | 4965816 |
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| End bp | 4968227 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640813871 |
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| Product | putative type II secretion system protein |
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| Protein accession | YP_001350166 |
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| Protein GI | 152986567 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0565778 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGCAAA CAGCTTTCCA TCCTGCCCGG CGTCGTTGGC CTGTACTGGG CGTGGCGCTG
GGCGCGCTGC TGGTCGCGGC GTGCAGCGAG ACGCCGAAGC TTCCCGGCGT GCCACCGGCC
GATGAGGAAA TCGGCCGGCC ATTGAGCAGC GTCCGCTCCG GCGCGCCGTT GCGCAACGCC
GATGTCGCTG GGCGACCCCA GGCCGAGCAG GCCCGCCGCG CGCTGGGCGC CGGGCGCGGC
GGGCCGCGCT CCAGCGGCGG CGCCCCGGCT CCGGCAGCTC CGGCCGAACT CGGCGAGCAG
CCGGTTAGCC TGAATTTCGT CGATACCGAG GTGGAAGCGG TGGTGCGCGC GCTGTCGCGC
GCCACTGGCC GGCAGTTCCT GGTCGACCCG CGGGTGAAAG GCAAGCTGAC CCTGGTCTCC
GAAGGCCAGG TGCCGGCGCG CACCGCCTAC CGGATGCTCA CCAGCGCCCT GCGTATGCAG
GGCTTCAGCG TGGTCGACGT CGACGGCGTC AGCCAGGTGG TGCCGGAGGC CGACGCCAAG
CTGCTCGGCG GGCCGGTCTA CGGCGCCGAC CGGCCGGCGG CCAACGGGAT GGTCACGCGG
ACCTTCCGCC TGCGCTACGA GAACGCGGTG AACCTGATCC CGGTGCTGCG CCCGATCGTC
GCGCAGAACA ATCCGATCAA CGCCTATCCG GGGAACAACA CCGTGGTGGT CACCGACTAC
GCGGAAAACC TCGACCGGGT CGCCGGGATC ATCGCCAGCA TCGACACCCC CAGCGCCAGC
GACACCGATG TGGTGCCGAT CCAGAACGGC ATCGCGGTGG ACATCGCCAG CACCGTCTCC
GAACTGCTCG ACAATCAGGG CAGCGGTGGC GCCGAGCAGG GCCAGAAGAC CGTGGTGCTC
GCCGATCCAC GCTCCAACAG CATCGTGATC CGCTCGCCGA GCCCGGAGCG CACGCAGCTG
GCGCGCGAGC TGATCGGCAA GCTCGACAGC GTGCAGAGCA ACCCCGGCAA CCTCCACGTG
GTGTACCTGC GCAACGCCCA GGCGACCCGC CTGGCCCAGG CCCTGCGCGG GCTGATCACC
GGCGACAGCG GCGGCGAGGG CAACGAGGGC GACCAGCAGC GCGCGCGCCT GAGCGGCGGC
GGCATGCTCG GTGGCGGCAA CAGCGGTACT GGTAGCCAGG GCCTGGGAAC CAGCGGCAAT
ACCACGGGCA GCGGTTCCAG CGGGCTGGGC GGCGGTAACC GCAGCGGCGG CGCCTACGGT
GCGATGGGCA GCGGCCAGGC CGGCGGCGGA CCCGGTGCGA TGGGCGAGGA GAACTCGGCG
TTCTCCGCCG GCGGCGTCAC CGTGCAGGCC GACGCCACCA CCAATACCCT GCTGATCTCC
GCGCCCGAGC CGCTGTACCG CAACCTCCGC GAAGTCATCG ACCTGCTCGA CCAGCGCCGC
GCCCAGGTGG TGATCGAAAG CCTGATCGTC GAGGTCAGCG AGGACGATTC CAGCGAGTTC
GGCATCCAGT GGCAGGCCGG CAACCTCGGC GGCAATGGCG TGATCGGCGG GGTCAACTTC
GGCCAGTCGG CGCTGAACAC GGCCGCCAGG AACAGCATCG ACGTGCTGCC CAAGGGCCTC
AACATCGGCC TGGTGGATGG CACCGTGGAC ATCCCGGGGA TCGGCAAGAT CCTCGACCTC
AAGGTGCTCG CCCGGGCGCT GAAGAGCCGC GGCGGCACCA ACGTGCTGTC GACCCCGAAC
CTTCTGACCC TGGACAACGA GTCGGCGAGC ATCATGGTCG GCCAGACCAT ACCCTTCGTC
AGCGGCCAGT ACGTCACCGA CGGCGGCGGT ACCAGCAACA ACCCGTTCCA GACCATCCAG
CGCGAGGACG TCGGCCTGAA GCTGAACATC CGACCGCAGA TTTCCGAAGG CGGCACGGTC
AAGCTCGACG TCTACCAGGA AGTCAGCAGC GTCGACGAGC GCGCCAGCAC CGTCGCCGGG
GTGGTCACCA ACAAGCGCGC GATCGATACC AGCATCCTCC TCGACGACGG CCAGATCATG
GTCCTCGGCG GCCTGTTGCA GGACAACGTG CAGGACAACA CCGACGGCGT TCCCGGACTC
TCCAGCCTGC CCGGCGTCGG CTCGCTGTTC CGCTACCAGA AGCGCTCGCG GACCAAGACC
AACCTGATGG TGTTCCTGCG TCCCTATATC GTCCGCGACG CCGCCGCCGG GCGCAGCATC
ACCCTCAACC GCTACGACTT CATCCGCCGC GCCCAGCAGC GCGTGCAACC GCGCCATGAC
TGGAGCGTCG GCGACATGCA GGCGCCGGTA CTGCCGCCGG CGGAGCAGGG CATCCCGCAG
GCCGCCTACG ACCTGCGCCC GACCCCGCGG CCGTTGCGTG CGGTACCGCT GGACGAGGCG
GCGCCGCTGT GA
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| Protein sequence | MRQTAFHPAR RRWPVLGVAL GALLVAACSE TPKLPGVPPA DEEIGRPLSS VRSGAPLRNA
DVAGRPQAEQ ARRALGAGRG GPRSSGGAPA PAAPAELGEQ PVSLNFVDTE VEAVVRALSR
ATGRQFLVDP RVKGKLTLVS EGQVPARTAY RMLTSALRMQ GFSVVDVDGV SQVVPEADAK
LLGGPVYGAD RPAANGMVTR TFRLRYENAV NLIPVLRPIV AQNNPINAYP GNNTVVVTDY
AENLDRVAGI IASIDTPSAS DTDVVPIQNG IAVDIASTVS ELLDNQGSGG AEQGQKTVVL
ADPRSNSIVI RSPSPERTQL ARELIGKLDS VQSNPGNLHV VYLRNAQATR LAQALRGLIT
GDSGGEGNEG DQQRARLSGG GMLGGGNSGT GSQGLGTSGN TTGSGSSGLG GGNRSGGAYG
AMGSGQAGGG PGAMGEENSA FSAGGVTVQA DATTNTLLIS APEPLYRNLR EVIDLLDQRR
AQVVIESLIV EVSEDDSSEF GIQWQAGNLG GNGVIGGVNF GQSALNTAAR NSIDVLPKGL
NIGLVDGTVD IPGIGKILDL KVLARALKSR GGTNVLSTPN LLTLDNESAS IMVGQTIPFV
SGQYVTDGGG TSNNPFQTIQ REDVGLKLNI RPQISEGGTV KLDVYQEVSS VDERASTVAG
VVTNKRAIDT SILLDDGQIM VLGGLLQDNV QDNTDGVPGL SSLPGVGSLF RYQKRSRTKT
NLMVFLRPYI VRDAAAGRSI TLNRYDFIRR AQQRVQPRHD WSVGDMQAPV LPPAEQGIPQ
AAYDLRPTPR PLRAVPLDEA APL
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